Forgia Marco, Daghino Stefania, Chiapello Marco, Ciuffo Marina, Turina Massimo
Institute for Sustainable Plant Protection, National Research Council of Italy, Strada Delle Cacce 73, Torino 10135, Italy.
Institute for Sustainable Plant Protection, National Research Council of Italy, Via Branze 39, Brescia 25123, Italy.
Virus Evol. 2024 Jan 5;10(1):veae003. doi: 10.1093/ve/veae003. eCollection 2024.
Recent advances in high throughput sequencing (HTS) approaches allowed a broad exploration of viromes from different fungal hosts, unveiling a great diversity of mycoviruses with interesting evolutionary features. The word mycovirus historically applies also to viruses infecting oomycetes but most studies are on viruses infecting fungi, with less mycoviruses found and characterized in oomycetes, particularly in the obligatory biotrophs. We, here, describe the first virome associated to , the causal agent of lettuce downy mildew, which is an important biotrophic pathogen for lettuce production and a model system for the molecular aspects of the plant-oomycetes interactions. Among the identified viruses, we could detect (1) two new negative sense ssRNA viruses related to the yueviruses, (2) the first example of permuted RdRp in a virus infecting fungi/oomycetes, (3) a new group of bipartite dsRNA viruses showing evidence of recent bi-segmentation and concomitantly, a possible duplication event bringing a bipartite genome to tripartite, (4) a first representative of a clade of viruses with evidence of recombination between distantly related viruses, (5) a new open reading frame (ORF)an virus encoding for an RdRp with low homology to known RNA viruses, and (6) a new virus, belonging to riboviria but not conserved enough to provide a conclusive phylogenetic placement that shows evidence of a recombination event between a kitrinoviricota-like and a pisuviricota-like sequence. The results obtained show a great diversity of viruses and evolutionary mechanisms previously unreported for oomycetes-infecting viruses, supporting the existence of a large diversity of oomycetes-specific viral clades ancestral of many fungal and insect virus clades.
高通量测序(HTS)方法的最新进展使得人们能够广泛探索来自不同真菌宿主的病毒群落,揭示了具有有趣进化特征的大量真菌病毒。从历史上看,“真菌病毒”一词也适用于感染卵菌的病毒,但大多数研究集中在感染真菌的病毒上,在卵菌中发现和表征的真菌病毒较少,尤其是在专性活体营养菌中。在此,我们描述了与莴苣霜霉病病原体相关的首个病毒群落,莴苣霜霉病是莴苣生产中的一种重要活体营养病原体,也是植物 - 卵菌相互作用分子方面的模型系统。在鉴定出的病毒中,我们能够检测到:(1)两种与越病毒相关的新负链单链RNA病毒;(2)在感染真菌/卵菌的病毒中首次出现的重排RNA依赖的RNA聚合酶(RdRp)实例;(3)一组新的双链RNA病毒,显示出近期二分体化的证据,同时还有一个可能的复制事件使二分体基因组变为三分体;(4)一个病毒分支的首个代表,有证据表明在远缘相关病毒之间发生了重组;(5)一个新的开放阅读框(ORF),编码一种与已知RNA病毒同源性低的RdRp的病毒;(6)一种新病毒,属于核糖病毒,但保守性不足以提供确凿的系统发育定位,显示出类似短尾病毒目和类似豌豆病毒目的序列之间发生重组的证据。所获得的结果表明,病毒和进化机制具有多样性,这在以前感染卵菌的病毒中未曾报道过,支持了存在大量卵菌特异性病毒分支的观点,这些分支是许多真菌和昆虫病毒分支的祖先。
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