文献检索文档翻译深度研究
Suppr Zotero 插件Zotero 插件
邀请有礼套餐&价格历史记录

新学期,新优惠

限时优惠:9月1日-9月22日

30天高级会员仅需29元

1天体验卡首发特惠仅需5.99元

了解详情
不再提醒
插件&应用
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
高级版
套餐订阅购买积分包
AI 工具
文献检索文档翻译深度研究
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2025

感染专性活体营养生物的病毒新分支代表了感染卵菌纲病毒的独特进化轨迹。

New clades of viruses infecting the obligatory biotroph representing distinct evolutionary trajectory for viruses infecting oomycetes.

作者信息

Forgia Marco, Daghino Stefania, Chiapello Marco, Ciuffo Marina, Turina Massimo

机构信息

Institute for Sustainable Plant Protection, National Research Council of Italy, Strada Delle Cacce 73, Torino 10135, Italy.

Institute for Sustainable Plant Protection, National Research Council of Italy, Via Branze 39, Brescia 25123, Italy.

出版信息

Virus Evol. 2024 Jan 5;10(1):veae003. doi: 10.1093/ve/veae003. eCollection 2024.


DOI:10.1093/ve/veae003
PMID:38361818
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10868552/
Abstract

Recent advances in high throughput sequencing (HTS) approaches allowed a broad exploration of viromes from different fungal hosts, unveiling a great diversity of mycoviruses with interesting evolutionary features. The word mycovirus historically applies also to viruses infecting oomycetes but most studies are on viruses infecting fungi, with less mycoviruses found and characterized in oomycetes, particularly in the obligatory biotrophs. We, here, describe the first virome associated to , the causal agent of lettuce downy mildew, which is an important biotrophic pathogen for lettuce production and a model system for the molecular aspects of the plant-oomycetes interactions. Among the identified viruses, we could detect (1) two new negative sense ssRNA viruses related to the yueviruses, (2) the first example of permuted RdRp in a virus infecting fungi/oomycetes, (3) a new group of bipartite dsRNA viruses showing evidence of recent bi-segmentation and concomitantly, a possible duplication event bringing a bipartite genome to tripartite, (4) a first representative of a clade of viruses with evidence of recombination between distantly related viruses, (5) a new open reading frame (ORF)an virus encoding for an RdRp with low homology to known RNA viruses, and (6) a new virus, belonging to riboviria but not conserved enough to provide a conclusive phylogenetic placement that shows evidence of a recombination event between a kitrinoviricota-like and a pisuviricota-like sequence. The results obtained show a great diversity of viruses and evolutionary mechanisms previously unreported for oomycetes-infecting viruses, supporting the existence of a large diversity of oomycetes-specific viral clades ancestral of many fungal and insect virus clades.

摘要

高通量测序(HTS)方法的最新进展使得人们能够广泛探索来自不同真菌宿主的病毒群落,揭示了具有有趣进化特征的大量真菌病毒。从历史上看,“真菌病毒”一词也适用于感染卵菌的病毒,但大多数研究集中在感染真菌的病毒上,在卵菌中发现和表征的真菌病毒较少,尤其是在专性活体营养菌中。在此,我们描述了与莴苣霜霉病病原体相关的首个病毒群落,莴苣霜霉病是莴苣生产中的一种重要活体营养病原体,也是植物 - 卵菌相互作用分子方面的模型系统。在鉴定出的病毒中,我们能够检测到:(1)两种与越病毒相关的新负链单链RNA病毒;(2)在感染真菌/卵菌的病毒中首次出现的重排RNA依赖的RNA聚合酶(RdRp)实例;(3)一组新的双链RNA病毒,显示出近期二分体化的证据,同时还有一个可能的复制事件使二分体基因组变为三分体;(4)一个病毒分支的首个代表,有证据表明在远缘相关病毒之间发生了重组;(5)一个新的开放阅读框(ORF),编码一种与已知RNA病毒同源性低的RdRp的病毒;(6)一种新病毒,属于核糖病毒,但保守性不足以提供确凿的系统发育定位,显示出类似短尾病毒目和类似豌豆病毒目的序列之间发生重组的证据。所获得的结果表明,病毒和进化机制具有多样性,这在以前感染卵菌的病毒中未曾报道过,支持了存在大量卵菌特异性病毒分支的观点,这些分支是许多真菌和昆虫病毒分支的祖先。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/661d/10868552/5d1e218a84d1/veae003f7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/661d/10868552/b391c50ff825/veae003f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/661d/10868552/bbecda66e1b0/veae003f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/661d/10868552/4a77e34ca301/veae003f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/661d/10868552/b3e39ab92e04/veae003f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/661d/10868552/a791f7614a7d/veae003f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/661d/10868552/6a85c4428bae/veae003f6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/661d/10868552/5d1e218a84d1/veae003f7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/661d/10868552/b391c50ff825/veae003f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/661d/10868552/bbecda66e1b0/veae003f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/661d/10868552/4a77e34ca301/veae003f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/661d/10868552/b3e39ab92e04/veae003f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/661d/10868552/a791f7614a7d/veae003f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/661d/10868552/6a85c4428bae/veae003f6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/661d/10868552/5d1e218a84d1/veae003f7.jpg

相似文献

[1]
New clades of viruses infecting the obligatory biotroph representing distinct evolutionary trajectory for viruses infecting oomycetes.

Virus Evol. 2024-1-5

[2]
Analysis of the virome associated to grapevine downy mildew lesions reveals new mycovirus lineages.

Virus Evol. 2020-11-30

[3]
Mycoviruses as a part of the global virome: Diversity, evolutionary links and lifestyle.

Adv Virus Res. 2023

[4]
Novel Mycoviruses Discovered in the Mycovirome of a Necrotrophic Fungus.

mBio. 2021-5-11

[5]
Survey of Early-Diverging Lineages of Fungi Reveals Abundant and Diverse Mycoviruses.

mBio. 2020-9-8

[6]
Co-infection of a hypovirulent isolate of Sclerotinia sclerotiorum with a new botybirnavirus and a strain of a mitovirus.

Virol J. 2016-6-6

[7]
Host interactors of effector proteins of the lettuce downy mildew Bremia lactucae obtained by yeast two-hybrid screening.

PLoS One. 2020-5-12

[8]
Specific in planta recognition of two GKLR proteins of the downy mildew Bremia lactucae revealed in a large effector screen in lettuce.

Mol Plant Microbe Interact. 2013-11

[9]
Evidence for high degrees of specialisation, evolutionary diversity, and morphological distinctiveness in the genus Bremia.

Fungal Biol. 2010-10-31

[10]
The genome of Lactuca saligna, a wild relative of lettuce, provides insight into non-host resistance to the downy mildew Bremia lactucae.

Plant J. 2023-7

引用本文的文献

[1]
The virome of the panglobal, wide host-range plant pathogen : phylogeography and evolutionary insights.

Virus Evol. 2025-4-1

[2]
Novel endornaviruses infecting that attenuate vegetative growth, promote sporangia formation and confer hypervirulence to the host oomycete.

J Gen Virol. 2025-5

[3]
Integrated analysis of protein sequence and structure redefines viral diversity and the taxonomy of the .

bioRxiv. 2025-1-18

[4]
Identification of a novel mycovirus belonging to the "flexivirus"-related family with icosahedral virion.

Virus Evol. 2024-11-6

[5]
Characterization and complete genome sequence of a novel zetapatitivirus from Penicillium exsudans isolate RCEF7900.

Arch Virol. 2024-12-12

[6]
New insights into RNA mycoviruses of fungal pathogens causing Fusarium head blight.

Virus Res. 2024-11

[7]
The Virome of Cocoa Fermentation-Associated Microorganisms.

Viruses. 2024-7-31

本文引用的文献

[1]
A collection of  isolates from natural environments in Sardinia reveals a complex virome that includes negative-sense fungal viruses with unprecedented genome organizations.

Virus Evol. 2023-7-4

[2]
Fast and accurate protein structure search with Foldseek.

Nat Biotechnol. 2024-2

[3]
Cheating leads to the evolution of multipartite viruses.

PLoS Biol. 2023-4

[4]
Bunyaviruses Affect Growth, Sporulation, and Elicitin Production in .

Viruses. 2022-11-22

[5]
Natural Populations from the Complex Show a High Diversity and Abundance of ssRNA and dsRNA Viruses.

J Fungi (Basel). 2022-10-24

[6]
Expansion of the global RNA virome reveals diverse clades of bacteriophages.

Cell. 2022-10-13

[7]
RNA viromes from terrestrial sites across China expand environmental viral diversity.

Nat Microbiol. 2022-8

[8]
The logic of virus evolution.

Cell Host Microbe. 2022-7-13

[9]
High Diversity of Novel Viruses in the Tree Pathogen Revealed by High-Throughput Sequencing of Total and Small RNA.

Front Microbiol. 2022-6-16

[10]
ColabFold: making protein folding accessible to all.

Nat Methods. 2022-6

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

推荐工具

医学文档翻译智能文献检索