揭示了门的新型内生细菌在南极荒漠中存在着无数潜在的生存策略。

Novel endolithic bacteria of phylum reveal a myriad of potential survival strategies in the Antarctic desert.

机构信息

School of Biotechnology and Biomolecular Sciences, UNSW Sydney, Sydney, New South Wales, Australia.

School of Biological, Earth and Environmental Sciences, UNSW Sydney, Sydney, New South Wales, Australia.

出版信息

Appl Environ Microbiol. 2024 Mar 20;90(3):e0226423. doi: 10.1128/aem.02264-23. Epub 2024 Feb 19.

Abstract

The ice-free McMurdo Dry Valleys of Antarctica are dominated by nutrient-poor mineral soil and rocky outcrops. The principal habitat for microorganisms is within rocks (endolithic). In this environment, microorganisms are provided with protection against sub-zero temperatures, rapid thermal fluctuations, extreme dryness, and ultraviolet and solar radiation. Endolithic communities include lichen, algae, fungi, and a diverse array of bacteria. is among the most abundant bacterial phyla present in these communities. Among the are four novel classes of bacteria, here named Spiritibacteria class. nov. (=UBA5177), Martimicrobia class. nov. (=UBA4733), Tarhunnaeia class. nov. (=UBA6077), and Uliximicrobia class. nov. (=UBA2235). We retrieved 17 high-quality metagenome-assembled genomes (MAGs) that represent these four classes. Based on genome predictions, all these bacteria are inferred to be aerobic heterotrophs that encode enzymes for the catabolism of diverse sugars. These and other organic substrates are likely derived from lichen, algae, and fungi, as metabolites (including photosynthate), cell wall components, and extracellular matrix components. The majority of MAGs encode the capacity for trace gas oxidation using high-affinity uptake hydrogenases, which could provide energy and metabolic water required for survival and persistence. Furthermore, some MAGs encode the capacity to couple the energy generated from H and CO oxidation to support carbon fixation (atmospheric chemosynthesis). All encode mechanisms for the detoxification and efflux of heavy metals. Certain MAGs encode features that indicate possible interactions with other organisms, such as Tc-type toxin complexes, hemolysins, and macroglobulins.IMPORTANCEThe ice-free McMurdo Dry Valleys of Antarctica are the coldest and most hyperarid desert on Earth. It is, therefore, the closest analog to the surface of the planet Mars. Bacteria and other microorganisms survive by inhabiting airspaces within rocks (endolithic). We identify four novel classes of phylum , and, based on interrogation of 17 metagenome-assembled genomes, we predict specific metabolic and physiological adaptations that facilitate the survival of these bacteria in this harsh environment-including oxidation of trace gases and the utilization of nutrients (including sugars) derived from lichen, algae, and fungi. We propose that such adaptations allow these endolithic bacteria to eke out an existence in this cold and extremely dry habitat.

摘要

南极洲无冰的麦克默多干燥谷以营养贫瘠的矿物土壤和岩石露头为主。微生物的主要栖息地是在岩石内(内生)。在这种环境中,微生物可以免受零下温度、快速热波动、极度干燥以及紫外线和太阳辐射的影响。内生群落包括地衣、藻类、真菌和各种各样的细菌。是这些群落中最丰富的细菌门之一。在这些中,有四个新的细菌类群,在这里被命名为 Spiritibacteria 新类群。nov.(= UBA5177)、Martimicrobia 新类群。nov.(= UBA4733)、Tarhunnaeia 新类群。nov.(= UBA6077)和 Uliximicrobia 新类群。nov.(= UBA2235)。我们获得了代表这四个类群的 17 个高质量宏基因组组装基因组(MAG)。根据基因组预测,所有这些细菌都被推断为好氧异养菌,能够分解各种糖的代谢酶。这些和其他有机底物可能来自地衣、藻类和真菌,如代谢物(包括光合作用产物)、细胞壁成分和细胞外基质成分。大多数 MAG 编码了利用高亲和力摄取氢酶氧化痕量气体的能力,这可以为生存和持续提供所需的能量和代谢水。此外,一些 MAG 编码了将 H 和 CO 氧化产生的能量耦合起来支持碳固定(大气化能合成)的能力。所有都编码了用于解毒和排出重金属的机制。某些 MAG 编码的特征表明它们可能与其他生物体相互作用,例如 Tc 型毒素复合物、溶血素和巨球蛋白。重要性南极洲无冰的麦克默多干燥谷是地球上最冷和最干旱的沙漠。因此,它是最接近火星表面的地方。细菌和其他微生物通过栖息在岩石内的空气空间(内生)来生存。我们鉴定了四个新的门类群,并且,基于对 17 个宏基因组组装基因组的分析,我们预测了特定的代谢和生理适应,这些适应有助于这些细菌在这种恶劣环境中的生存,包括痕量气体的氧化和利用来自地衣、藻类和真菌的营养物质(包括糖)。我们提出,这种适应使这些内生细菌能够在这种寒冷和极度干燥的栖息地中生存。

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