来自肯尼亚霍马湾县的两种蓝藻培养物的宏基因组组装基因组序列。
Metagenome-assembled genome sequences of two cyanobacterial cultures from Homa Bay County, Kenya.
作者信息
Brown Katelyn M, Ward Christopher S, Bullerjahn George S
机构信息
Department of Biological Sciences, Bowling Green State University, Bowling Green, Ohio, USA.
Great Lakes Center for Fresh Waters and Human Health, Bowling Green State University, Bowling Green, Ohio, USA.
出版信息
Microbiol Resour Announc. 2024 Mar 12;13(3):e0120523. doi: 10.1128/mra.01205-23. Epub 2024 Feb 20.
Abstract
Metagenome-assembled genomes were generated for two xenic cyanobacterial strains collected from aquatic sources in Kenya and sequenced by NovaSeq S4. Here, we report the classification and genome statistics of WG22 and LS22.
摘要
对从肯尼亚水源采集的两株混合培养蓝藻菌株构建了宏基因组组装基因组，并通过NovaSeq S4进行测序。在此，我们报告了WG22和LS22的分类及基因组统计信息。
相似文献
1
Metagenome-assembled genome sequences of two cyanobacterial cultures from Homa Bay County, Kenya.来自肯尼亚霍马湾县的两种蓝藻培养物的宏基因组组装基因组序列。
Microbiol Resour Announc. 2024 Mar 12;13(3):e0120523. doi: 10.1128/mra.01205-23. Epub 2024 Feb 20.
2
Bacterial community and cyanotoxin gene distribution of the Winam Gulf, Lake Victoria, Kenya.肯尼亚维多利亚湖温亚马湾的细菌群落和蓝藻毒素基因分布。
Environ Microbiol Rep. 2024 Jun;16(3):e13297. doi: 10.1111/1758-2229.13297.
3
Characterization of Potential Threats from Cyanobacterial Toxins in Lake Victoria Embayments and during Water Treatment.维多利亚湖港湾和水处理过程中蓝藻毒素的潜在威胁分析。
Toxins (Basel). 2022 Sep 23;14(10):664. doi: 10.3390/toxins14100664.
4
Draft genome sequences of three strains cultivated from a eutrophic lake in Norwalk, Ohio (USA).从美国俄亥俄州诺沃克一个富营养化湖泊中培养的三株菌株的基因组序列草图。
Microbiol Resour Announc. 2024 Oct 10;13(10):e0070824. doi: 10.1128/mra.00708-24. Epub 2024 Sep 9.
5
Complete genome sequence and genomic characterization of Microcystis panniformis FACHB 1757 by third-generation sequencing.利用第三代测序技术对微囊藻（Microcystis panniformis）FACHB 1757进行全基因组测序及基因组特征分析
Stand Genomic Sci. 2016 Jan 28;11:11. doi: 10.1186/s40793-016-0130-5. eCollection 2016.
6
Stringent Response of Cyanobacteria and Other Bacterioplankton during Different Stages of a Harmful Cyanobacterial Bloom.在有害蓝藻水华的不同阶段，蓝藻和其他细菌浮游生物的严格响应。
Environ Sci Technol. 2023 Oct 24;57(42):16016-16032. doi: 10.1021/acs.est.3c03114. Epub 2023 Oct 11.
7
Assembly of Using Ultra-Long Reads.使用超长读段进行组装。
Front Microbiol. 2021 Apr 16;12:657995. doi: 10.3389/fmicb.2021.657995. eCollection 2021.
8
Molecular characterization and toxin quantification of Microcystis panniformis: A microcystin producer in Lake Taihu, China.太湖水华微囊藻的分子特征和毒素定量分析：一种产微囊藻毒素的藻类。
J Environ Sci (China). 2019 Feb;76:359-367. doi: 10.1016/j.jes.2018.05.029. Epub 2018 Jun 9.
9
Shotgun Metagenomic Analyses of Microbial Assemblages in the Aquatic Ecosystem of Winam Gulf of Lake Victoria, Kenya Reveals Multiclass Pollution.肯尼亚维多利亚湖温亚马湾水生态系统微生物组合的 shotgun 宏基因组分析揭示了多类污染。
Biomed Res Int. 2023 Jul 21;2023:3724531. doi: 10.1155/2023/3724531. eCollection 2023.
10
The Western Lake Erie culture collection: A promising resource for evaluating the physiological and genetic diversity of Microcystis and its associated microbiome.西伊利湖菌群集合：评估微囊藻及其相关微生物组生理和遗传多样性的有前景资源。
Harmful Algae. 2023 Jul;126:102440. doi: 10.1016/j.hal.2023.102440. Epub 2023 Apr 30.
引用本文的文献
1
Metagenomics reveals spatial variation in cyanobacterial composition, function, and biosynthetic potential in the Winam Gulf, Lake Victoria, Kenya.宏基因组学揭示了肯尼亚维多利亚湖维纳姆湾蓝藻细菌组成、功能及生物合成潜力的空间差异。
Appl Environ Microbiol. 2025 Feb 19;91(2):e0150724. doi: 10.1128/aem.01507-24. Epub 2025 Jan 8.
2
Molecular investigation of harmful cyanobacteria reveals hidden risks and niche partitioning in Kenyan Lakes.分子调查揭示肯尼亚湖泊有害蓝藻的隐藏风险和生态位分离
Harmful Algae. 2024 Dec;140:102757. doi: 10.1016/j.hal.2024.102757. Epub 2024 Nov 10.
3
Bacterial community and cyanotoxin gene distribution of the Winam Gulf, Lake Victoria, Kenya.肯尼亚维多利亚湖温亚马湾的细菌群落和蓝藻毒素基因分布。
Environ Microbiol Rep. 2024 Jun;16(3):e13297. doi: 10.1111/1758-2229.13297.
本文引用的文献
1
antiSMASH 7.0: new and improved predictions for detection, regulation, chemical structures and visualisation.antiSMASH 7.0：用于检测、调控、化学结构和可视化的全新且改进的预测功能。
Nucleic Acids Res. 2023 Jul 5;51(W1):W46-W50. doi: 10.1093/nar/gkad344.
2
RefSeq: expanding the Prokaryotic Genome Annotation Pipeline reach with protein family model curation.RefSeq：通过蛋白质家族模型编纂扩展原核生物基因组注释管道的覆盖范围。
Nucleic Acids Res. 2021 Jan 8;49(D1):D1020-D1028. doi: 10.1093/nar/gkaa1105.
3
GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database.GTDB-Tk：一个使用基因组分类数据库对基因组进行分类的工具包。
Bioinformatics. 2019 Nov 15;36(6):1925-7. doi: 10.1093/bioinformatics/btz848.
4
High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries.高通量 ANI 分析 9 万余组原核基因组揭示了清晰的物种界限。
Nat Commun. 2018 Nov 30;9(1):5114. doi: 10.1038/s41467-018-07641-9.
5
KBase: The United States Department of Energy Systems Biology Knowledgebase.KBase：美国能源部系统生物学知识库。
Nat Biotechnol. 2018 Jul 6;36(7):566-569. doi: 10.1038/nbt.4163.
6
Recovery of genomes from metagenomes via a dereplication, aggregation and scoring strategy.通过去重、聚合和评分策略从宏基因组中恢复基因组。
Nat Microbiol. 2018 Jul;3(7):836-843. doi: 10.1038/s41564-018-0171-1. Epub 2018 May 28.
7
RefSeq: an update on prokaryotic genome annotation and curation.RefSeq：原核生物基因组注释和管理的最新进展。
Nucleic Acids Res. 2018 Jan 4;46(D1):D851-D860. doi: 10.1093/nar/gkx1068.
8
metaSPAdes: a new versatile metagenomic assembler.metaSPAdes：一种新型通用宏基因组序列拼接软件
Genome Res. 2017 May;27(5):824-834. doi: 10.1101/gr.213959.116. Epub 2017 Mar 15.
9
NCBI prokaryotic genome annotation pipeline.美国国立生物技术信息中心原核生物基因组注释管道
Nucleic Acids Res. 2016 Aug 19;44(14):6614-24. doi: 10.1093/nar/gkw569. Epub 2016 Jun 24.
10
MaxBin 2.0: an automated binning algorithm to recover genomes from multiple metagenomic datasets.MaxBin 2.0：一种从多个宏基因组数据集中恢复基因组的自动分箱算法。
Bioinformatics. 2016 Feb 15;32(4):605-7. doi: 10.1093/bioinformatics/btv638. Epub 2015 Oct 29.
Zotero 插件