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通过 3D 电子衍射确定从虫草中分离得到的天然真菌产物 beauveriolide I 的结构和绝对构型。

Structure and absolute configuration of natural fungal product beauveriolide I, isolated from Cordyceps javanica, determined by 3D electron diffraction.

机构信息

Department of Structure Analysis, Institute of Physics of the Czech Academy of Sciences, Na Slovance 1999/2, Prague 8, 18221, Czech Republic.

Biology Centre, Czech Academy of Sciences, Branišovská 1160/31, České Budějovice 2, 370 05, Czech Republic.

出版信息

Acta Crystallogr C Struct Chem. 2024 Mar 1;80(Pt 3):56-61. doi: 10.1107/S2053229624001359. Epub 2024 Feb 27.

Abstract

Beauveriolides, including the main beauveriolide I {systematic name: (3R,6S,9S,13S)-9-benzyl-13-[(2S)-hexan-2-yl]-6-methyl-3-(2-methylpropyl)-1-oxa-4,7,10-triazacyclotridecane-2,5,8,11-tetrone, CHNO}, are a series of cyclodepsipeptides that have shown promising results in the treatment of Alzheimer's disease and in the prevention of foam cell formation in atherosclerosis. Their crystal structure studies have been difficult due to their tiny crystal size and fibre-like morphology, until now. Recent developments in 3D electron diffraction methodology have made it possible to accurately study the crystal structures of submicron crystals by overcoming the problems of beam sensitivity and dynamical scattering. In this study, the absolute structure of beauveriolide I was determined by 3D electron diffraction. The cyclodepsipeptide crystallizes in the space group I2 with lattice parameters a = 40.2744 (4), b = 5.0976 (5), c = 27.698 (4) Å and β = 105.729 (6)°. After dynamical refinement, its absolute structure was determined by comparing the R factors and calculating the z-scores of the two possible enantiomorphs of beauveriolide I.

摘要

除虫菊内酯,包括主要的除虫菊内酯 I(系统名称:(3R,6S,9S,13S)-9-苄基-13-[(2S)-己基]-6-甲基-3-(2-甲基丙基)-1-氧杂-4,7,10-三氮杂环十三烷-2,5,8,11-四酮,CHNO),是一系列环二肽,在治疗阿尔茨海默病和预防动脉粥样硬化中泡沫细胞形成方面显示出良好的效果。由于其微小的晶体尺寸和纤维状形态,它们的晶体结构研究一直很困难,直到现在。3D 电子衍射方法的最新发展使得通过克服束灵敏度和动态散射的问题来准确研究亚微米晶体的晶体结构成为可能。在这项研究中,通过 3D 电子衍射确定了除虫菊内酯 I 的绝对结构。该环二肽肽在空间群 I2 中结晶,晶格参数为 a = 40.2744 (4),b = 5.0976 (5),c = 27.698 (4) Å 和 β = 105.729 (6)°。经过动态细化后,通过比较两种可能的除虫菊内酯 I 对映异构体的 R 因子和计算 z 分数来确定其绝对结构。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/712c/10913083/6b0801893023/c-80-00056-fig1.jpg

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