Laboratoire Physiologie Cellulaire et Végétale, Université Grenoble Alpes, Centre national de la recherche scientifique, Commissariat à l'énergie atomique et aux énergies alternatives, Institut national de recherche pour l'agriculture, l'alimentation et l'environnement, Département de Biologie Structurale et Cellulaire intégrée, Grenoble F-38054, France.
Dipartimento di Bioscienze, Università degli Studi di Milano, Milano 20133, Italy.
Proc Natl Acad Sci U S A. 2024 Mar 5;121(10):e2310464121. doi: 10.1073/pnas.2310464121. Epub 2024 Feb 27.
The ALOG (Arabidopsis LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 (LSH1) and Oryza G1) proteins are conserved plant-specific Transcription Factors (TFs). They play critical roles in the development of various plant organs (meristems, inflorescences, floral organs, and nodules) from bryophytes to higher flowering plants. Despite the fact that the first members of this family were originally discovered in Arabidopsis, their role in this model plant has remained poorly characterized. Moreover, how these transcriptional regulators work at the molecular level is unknown. Here, we study the redundant function of the ALOG proteins LSH1,3,4 from Arabidopsis. We uncover their role in the repression of bract development and position them within a gene regulatory network controlling this process and involving the floral regulators LEAFY, BLADE-ON-PETIOLE, and PUCHI. Next, using in vitro genome-wide studies, we identified the conserved DNA motif bound by ALOG proteins from evolutionarily distant species (the liverwort and the flowering plants Arabidopsis, tomato, and rice). Resolution of the crystallographic structure of the ALOG DNA-binding domain in complex with DNA revealed the domain is a four-helix bundle with a disordered NLS and a zinc ribbon insertion between helices 2 and 3. The majority of DNA interactions are mediated by specific contacts made by the third alpha helix and the NLS. Taken together, this work provides the biochemical and structural basis for DNA-binding specificity of an evolutionarily conserved TF family and reveals its role as a key player in Arabidopsis flower development.
ALOG(拟南芥光依赖性短下胚轴 1(LSH1)和水稻 G1)蛋白是保守的植物特异性转录因子(TFs)。它们在从苔藓植物到高等开花植物的各种植物器官(分生组织、花序、花器官和根瘤)的发育中发挥着关键作用。尽管这个家族的最初成员最初是在拟南芥中发现的,但它们在这个模式植物中的作用仍未得到充分表征。此外,这些转录调节剂如何在分子水平上发挥作用尚不清楚。在这里,我们研究了拟南芥ALOG 蛋白 LSH1、3、4 的冗余功能。我们揭示了它们在抑制苞片发育中的作用,并将其定位在一个控制该过程的基因调控网络中,该网络涉及花调节因子 LEAFY、BLADE-ON-PETIOLE 和 PUCHI。接下来,我们使用体外全基因组研究,鉴定了进化上相距较远的物种(苔藓植物和开花植物拟南芥、番茄和水稻)ALOG 蛋白结合的保守 DNA 模体。ALOG DNA 结合域与 DNA 复合物的晶体结构解析揭示了该结构域是一个四螺旋束,带有一个无序的核定位信号(NLS)和一个位于螺旋 2 和 3 之间的锌带插入。大多数 DNA 相互作用是由第三个α螺旋和 NLS 进行的特异性接触介导的。总之,这项工作为一个进化上保守的 TF 家族的 DNA 结合特异性提供了生化和结构基础,并揭示了其作为拟南芥花发育关键调控因子的作用。