Xu Yibin, Zeng Sheng, Meng Yuanzheng, Yang Deyuan, Yang Shengchang
Key Laboratory of Cultivation and High-value Utilization of Marine Organisms in Fujian Province, Fisheries Research Institute of Fujian, Xiamen, China Key Laboratory of Cultivation and High-value Utilization of Marine Organisms in Fujian Province, Fisheries Research Institute of Fujian Xiamen China.
College of the Environment and Ecology, Xiamen University, Xiamen, China Xiamen University Xiamen China.
Zookeys. 2024 Feb 22;1192:237-255. doi: 10.3897/zookeys.1192.116269. eCollection 2024.
Research on complete mitochondrial genomes can help in understanding the molecular evolution and phylogenetic relationships of various species. In this study, the complete mitogenome of was characterized to supplement the limited mitogenomic information on the genus . Three distinct assembly methods, GetOrganelle, NovoPlasty and SPAdes, were used to ensure reliable assembly. The 15,691 bp mitogenome contains 37 genes and an AT-rich region. Notably, the cytochrome c oxidase subunit I () gene, commonly used for species identification, appears to be slow-evolving and less variable, which may suggest the inclusion of rapidly evolving genes (NADH dehydrogenase subunit 6 [] or NADH dehydrogenase subunit 2 []) as markers in diagnostic, detection, and population genetic studies of Cerithioidea. Moreover, we identified the unreliability of annotations (e.g., the absence of annotations for NADH dehydrogenase subunit 4L [] in NC_037771) and potential misidentifications (NC_023364) in public databases, which indicate that data from public databases should be manually curated in future research. Phylogenetic analyses of Cerithioidea based on different datasets generated identical trees using maximum likelihood and Bayesian inference methods. The results confirm that Semisulcospiridae is closely related to Pleuroceridae. The sequences of Semisulcospiridae clustered into three clades, of which is one; is sister to the other two clades. The findings of this study will contribute to a better understanding of the characteristics of the mitogenome and the phylogenetic relationships of Semisulcospiridae. The inclusion of further mitochondrial genome sequences will improve knowledge of the phylogeny and origin of Cerithioidea.
对完整线粒体基因组的研究有助于理解各种物种的分子进化和系统发育关系。在本研究中,对[物种名称]的完整线粒体基因组进行了特征分析,以补充该属有限的线粒体基因组信息。使用了三种不同的组装方法,即GetOrganelle、NovoPlasty和SPAdes,以确保可靠的组装。这个15,691 bp的线粒体基因组包含37个基因和一个富含AT的区域。值得注意的是,常用于物种鉴定的细胞色素c氧化酶亚基I([基因名称])基因似乎进化缓慢且变异较少,这可能表明在蟹守螺总科的诊断、检测和群体遗传学研究中,应纳入快速进化的基因(如NADH脱氢酶亚基6 [基因名称]或NADH脱氢酶亚基2 [基因名称])作为标记。此外,我们发现了公共数据库中注释的不可靠性(例如,NC_037771中没有NADH脱氢酶亚基4L [基因名称]的注释)和潜在的错误鉴定(NC_023364),这表明在未来的研究中应手动整理公共数据库中的数据。基于不同数据集对蟹守螺总科进行的系统发育分析,使用最大似然法和贝叶斯推断法生成了相同的树。结果证实,拟沼螺科与肋蜷科密切相关。拟沼螺科的序列聚为三个分支,其中[物种名称]是一个分支;[物种名称]与其他两个分支互为姐妹分支。本研究的结果将有助于更好地理解[物种名称]线粒体基因组的特征以及拟沼螺科的系统发育关系。纳入更多的线粒体基因组序列将增进对蟹守螺总科系统发育和起源的了解。