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构建一个细胞所需的最小能量。

The minimum energy required to build a cell.

机构信息

UK Centre for Astrobiology, School of Physics and Astronomy, University of Edinburgh, Edinburgh, UK.

Department of Earth Sciences, University of Toronto, Toronto, ON, Canada.

出版信息

Sci Rep. 2024 Mar 4;14(1):5267. doi: 10.1038/s41598-024-54303-6.

Abstract

Understanding the energy requirements for cell synthesis accurately and comprehensively has been a longstanding challenge. We introduce a computational model that estimates the minimum energy necessary to build any cell from its constituent parts. This method combines omics and internal cell compositions from various sources to calculate the Gibbs Free Energy of biosynthesis independently of specific metabolic pathways. Our public tool, Synercell, can be used with other models for minumum species-specific energy estimations in any well-sequenced species. The energy for synthesising the genome, transcriptome, proteome, and lipid bilayer of four cell types: Escherichia coli, Saccharomyces cerevisiae, an average mammalian cell and JCVI-syn3A were estimated. Their modelled minimum synthesis energies at 298 K were J/cell, J/cell, J/cell and respectively. Gram-for-gram synthesis of lipid bilayers requires the most energy, followed by the proteome, genome, and transcriptome. The average per gram cost of biomass synthesis is in the 300s of J/g for all four cells. Implications for the generalisability of cell construction and applications to biogeosciences, cellular biology, biotechnology, and astrobiology are discussed.

摘要

准确全面地了解细胞合成所需的能量一直是一个长期存在的挑战。我们引入了一种计算模型,该模型可以估算从其组成部分构建任何细胞所需的最小能量。该方法结合了来自不同来源的组学和内部细胞成分,独立于特定代谢途径来计算生物合成的吉布斯自由能。我们的公共工具 Synercell 可以与其他模型结合使用,以便在任何测序良好的物种中进行最小特定物种能量估算。我们估计了四种细胞类型(大肠杆菌、酿酒酵母、平均哺乳动物细胞和 JCVI-syn3A)的基因组、转录组、蛋白质组和脂双层合成所需的能量。它们在 298 K 时的最小合成能分别为 J/细胞、J/细胞、J/细胞和 J/细胞。合成脂双层每克所需的能量最多,其次是蛋白质组、基因组和转录组。所有四种细胞的生物量合成每克成本平均在 300 J/g 左右。讨论了细胞构建的普遍性及其在生物地球科学、细胞生物学、生物技术和天体生物学中的应用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/be9d/11306549/69151c0a2f17/41598_2024_54303_Fig1_HTML.jpg

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