Feng Zhusheng, Fan Yingnan, Shi Xiaofei, Luo Xu, Xie Jiangang, Liu Shanshou, Duan Chujun, Wang Qianmei, Ye Yuqin, Yin Wen
Department of Emergency, Xijing Hospital, The Air Force Medical University, Xi'an, China.
Department of Neurosurgery, Xijing Hospital, The Air Force Medical University, Xi'an, China.
Heliyon. 2024 Feb 28;10(5):e27000. doi: 10.1016/j.heliyon.2024.e27000. eCollection 2024 Mar 15.
OBJECTIVE: The early targeted and effective diagnosis and treatment of severe trauma are crucial for patients' outcomes. Blood leukocytes act as significant effectors during the initial inflammation and activation of innate immunity in trauma. This study aims to identify hub genes related to patients' prognosis in blood leukocytes at the early stages of trauma. METHODS: The expression profiles of Gene Expression Omnibus (GEO) Series (GSE) 36809 and GSE11375 were downloaded from the GEO database. R software, GraphPad Prism 9.3.1 software, STRING database, and Cytoscape software were used to process the data and identify hub genes in blood leukocytes of early trauma. RESULTS: Gene Ontology (GO) analysis showed that the differentially expressed genes (DEGs) of blood leukocytes at the early stages of trauma (0-4 h, 4-8 h, and 8-12 h) were mainly involved in neutrophil activation and neutrophil degranulation, neutrophil activation involved in immune response, neutrophil mediated immunity, lymphocyte differentiation, and cell killing. Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis showed that the DEGs were mainly involved in Osteoclast differentiation and Hematopoietic cell lineage. Sixty-six down-regulated DEGs and 148 up-regulated DEGs were identified and 37 hub genes were confirmed by Molecular Complex Detection (MCODE) of Cytoscape. Among the hub genes, Lipocalin 2 (LCN2), Lactotransferrin (LTF), Olfactomedin 4 (OLFM4), Resistin (RETN), and Transcobalamin 1 (TCN1) were related to prognosis and connected with iron transport closely. LCN2 and LTF were involved in iron transport and had a moderate predictive value for the poor prognosis of trauma patients, and the AUC of LCN2 and LTF was 0.7777 and 0.7843, respectively. CONCLUSION: As iron transport-related hub genes in blood leukocytes, LCN2 and LTF can be used for prognostic prediction of early trauma.
目的:严重创伤的早期靶向和有效诊断与治疗对患者的预后至关重要。血液白细胞在创伤后固有免疫的初始炎症和激活过程中起着重要作用。本研究旨在确定创伤早期血液白细胞中与患者预后相关的关键基因。 方法:从基因表达综合数据库(GEO)下载基因表达谱系列(GSE)36809和GSE11375。使用R软件、GraphPad Prism 9.3.1软件、STRING数据库和Cytoscape软件处理数据并鉴定早期创伤血液白细胞中的关键基因。 结果:基因本体论(GO)分析表明,创伤早期(0 - 4小时、4 - 8小时和8 - 12小时)血液白细胞的差异表达基因(DEGs)主要参与中性粒细胞激活和中性粒细胞脱颗粒、参与免疫反应的中性粒细胞激活、中性粒细胞介导的免疫、淋巴细胞分化和细胞杀伤。京都基因与基因组百科全书(KEGG)分析表明,DEGs主要参与破骨细胞分化和造血细胞谱系。鉴定出66个下调的DEGs和148个上调的DEGs,并通过Cytoscape的分子复合物检测(MCODE)确认了37个关键基因。在关键基因中,脂钙蛋白2(LCN2)、乳铁蛋白(LTF)、嗅觉介质4(OLFM4)、抵抗素(RETN)和钴胺素转运蛋白1(TCN1)与预后相关且与铁转运密切相关。LCN2和LTF参与铁转运,对创伤患者的不良预后具有中等预测价值,LCN2和LTF的曲线下面积(AUC)分别为0.7777和0.7843。 结论:作为血液白细胞中与铁转运相关的关键基因,LCN2和LTF可用于早期创伤的预后预测。
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