• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

多尺度建模乙型肝炎病毒感染,整合细胞内和细胞间病毒传播,以分析细胞外病毒标志物。

Multiscale modeling of HBV infection integrating intra- and intercellular viral propagation to analyze extracellular viral markers.

机构信息

interdisciplinary Biology Laboratory (iBLab), Division of Natural Science, Graduate School of Science, Nagoya University, Nagoya, Japan.

Department of Scientific Computing, Pukyong National University, Busan, South Korea.

出版信息

PLoS Comput Biol. 2024 Mar 11;20(3):e1011238. doi: 10.1371/journal.pcbi.1011238. eCollection 2024 Mar.

DOI:10.1371/journal.pcbi.1011238
PMID:38466770
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10957078/
Abstract

Chronic infection with hepatitis B virus (HBV) is caused by the persistence of closed circular DNA (cccDNA) in the nucleus of infected hepatocytes. Despite available therapeutic anti-HBV agents, eliminating the cccDNA remains challenging. Thus, quantifying and understanding the dynamics of cccDNA are essential for developing effective treatment strategies and new drugs. However, such study requires repeated liver biopsy to measure the intrahepatic cccDNA, which is basically not accepted because liver biopsy is potentially morbid and not common during hepatitis B treatment. We here aimed to develop a noninvasive method for quantifying cccDNA in the liver using surrogate markers in peripheral blood. We constructed a multiscale mathematical model that explicitly incorporates both intracellular and intercellular HBV infection processes. The model, based on age-structured partial differential equations, integrates experimental data from in vitro and in vivo investigations. By applying this model, we roughly predicted the amount and dynamics of intrahepatic cccDNA within a certain range using specific viral markers in serum samples, including HBV DNA, HBsAg, HBeAg, and HBcrAg. Our study represents a significant step towards advancing the understanding of chronic HBV infection. The noninvasive quantification of cccDNA using our proposed method holds promise for improving clinical analyses and treatment strategies. By comprehensively describing the interactions of all components involved in HBV infection, our multiscale mathematical model provides a valuable framework for further research and the development of targeted interventions.

摘要

慢性乙型肝炎病毒 (HBV) 感染是由感染肝细胞内的闭合环状 DNA (cccDNA) 持续存在引起的。尽管有可用的治疗乙型肝炎病毒的药物,但消除 cccDNA 仍然具有挑战性。因此,定量和了解 cccDNA 的动态对于开发有效的治疗策略和新药至关重要。然而,这种研究需要通过重复肝活检来测量肝内 cccDNA,但由于肝活检具有潜在的病态且在乙型肝炎治疗期间并不常见,因此基本上无法接受。我们旨在开发一种使用外周血替代标志物来定量肝脏 cccDNA 的非侵入性方法。我们构建了一个多尺度数学模型,该模型明确纳入了细胞内和细胞间的乙型肝炎病毒感染过程。该模型基于年龄结构的偏微分方程,整合了来自体外和体内研究的实验数据。通过应用该模型,我们使用血清样本中的特定病毒标志物(包括 HBV DNA、HBsAg、HBeAg 和 HBcrAg),大致预测了一定范围内肝内 cccDNA 的数量和动态。我们的研究代表了在理解慢性乙型肝炎病毒感染方面迈出的重要一步。使用我们提出的方法无创定量 cccDNA 有望改善临床分析和治疗策略。通过全面描述乙型肝炎病毒感染中所有涉及成分的相互作用,我们的多尺度数学模型为进一步研究和靶向干预提供了有价值的框架。

相似文献

1
Multiscale modeling of HBV infection integrating intra- and intercellular viral propagation to analyze extracellular viral markers.多尺度建模乙型肝炎病毒感染,整合细胞内和细胞间病毒传播,以分析细胞外病毒标志物。
PLoS Comput Biol. 2024 Mar 11;20(3):e1011238. doi: 10.1371/journal.pcbi.1011238. eCollection 2024 Mar.
2
Multiscale modeling of HBV infection integrating intra- and intercellular viral propagation for analyzing extracellular viral markers.整合细胞内和细胞间病毒传播以分析细胞外病毒标志物的乙肝病毒感染多尺度建模
bioRxiv. 2023 Jun 7:2023.06.06.543822. doi: 10.1101/2023.06.06.543822.
3
Serum hepatitis B core-related antigen (HBcrAg) correlates with covalently closed circular DNA transcriptional activity in chronic hepatitis B patients.血清乙型肝炎核心相关抗原 (HBcrAg) 与慢性乙型肝炎患者共价闭合环状 DNA 转录活性相关。
J Hepatol. 2019 Apr;70(4):615-625. doi: 10.1016/j.jhep.2018.11.030. Epub 2018 Dec 7.
4
Quantification of circulating HBV RNA expressed from intrahepatic cccDNA in untreated and NUC treated patients with chronic hepatitis B.定量检测未经核苷(酸)类似物治疗和治疗的慢性乙型肝炎患者肝内cccDNA 转录的 HBV RNA。
Gut. 2024 Mar 7;73(4):659-667. doi: 10.1136/gutjnl-2023-330644.
5
Prediction of cccDNA dynamics in hepatitis B patients by a combination of serum surrogate markers.联合血清替代标志物预测乙型肝炎患者cccDNA动态变化
PLoS Comput Biol. 2025 Jan 9;21(1):e1012615. doi: 10.1371/journal.pcbi.1012615. eCollection 2025 Jan.
6
Serum HBV DNA plus RNA reflecting cccDNA level before and during NAs treatment in HBeAg positive CHB patients.HBV DNA 加 RNA 在 HBeAg 阳性 CHB 患者 NAs 治疗前后反映 cccDNA 水平。
Int J Med Sci. 2022 May 9;19(5):858-866. doi: 10.7150/ijms.71737. eCollection 2022.
7
Correlation of HBcrAg with Intrahepatic Hepatitis B Virus Total DNA and Covalently Closed Circular DNA in HBeAg-Positive Chronic Hepatitis B Patients.HBcrAg 与 HBeAg 阳性慢性乙型肝炎患者肝内乙型肝炎病毒总 DNA 和共价闭合环状 DNA 的相关性。
J Clin Microbiol. 2019 Jan 2;57(1). doi: 10.1128/JCM.01303-18. Print 2019 Jan.
8
Serum Hepatitis B Virus DNA, RNA, and HBsAg: Which Correlated Better with Intrahepatic Covalently Closed Circular DNA before and after Nucleos(t)ide Analogue Treatment?血清乙型肝炎病毒 DNA、RNA 和 HBsAg:核苷(酸)类似物治疗前后与肝内共价闭合环状 DNA 相关性更好的是哪一个?
J Clin Microbiol. 2017 Oct;55(10):2972-2982. doi: 10.1128/JCM.00760-17. Epub 2017 Jul 26.
9
Serum HBV RNA correlated with intrahepatic cccDNA more strongly than other HBV markers during peg-interferon treatment.在聚乙二醇干扰素治疗期间,血清 HBV RNA 与肝内 cccDNA 的相关性强于其他 HBV 标志物。
Virol J. 2021 Jan 6;18(1):4. doi: 10.1186/s12985-020-01471-2.
10
Hepatitis B virus core-related antigen as a surrogate marker for covalently closed circular DNA.乙型肝炎病毒核心相关抗原作为共价闭合环状 DNA 的替代标志物。
Liver Int. 2017 Jul;37(7):995-1001. doi: 10.1111/liv.13346. Epub 2017 Jan 28.

引用本文的文献

1
Bistability between acute and chronic states in a Model of Hepatitis B Virus Dynamics.乙型肝炎病毒动力学模型中急性和慢性状态之间的双稳态
Math Biosci. 2025 May 31;387:109467. doi: 10.1016/j.mbs.2025.109467.
2
A multiscale model of the action of a capsid assembly modulator for the treatment of chronic hepatitis B.一种用于治疗慢性乙型肝炎的衣壳组装调节剂作用的多尺度模型。
PLoS Comput Biol. 2025 May 6;21(5):e1012322. doi: 10.1371/journal.pcbi.1012322. eCollection 2025 May.
3
Modeling of hepatitis B virus kinetics and accumulation of cccDNA in primary human hepatocytes.

本文引用的文献

1
Rapid monophasic HBsAg decline during nucleic-acid polymer-based therapy predicts functional cure.基于核酸聚合酶的治疗过程中 HBsAg 快速单相下降预示着功能性治愈。
Hepatol Commun. 2023 Jul 17;7(8). doi: 10.1097/HC9.0000000000000205. eCollection 2023 Aug 1.
2
An age-structured model of hepatitis B viral infection highlights the potential of different therapeutic strategies.乙型肝炎病毒感染的年龄结构模型突出了不同治疗策略的潜力。
Sci Rep. 2022 Jan 24;12(1):1252. doi: 10.1038/s41598-021-04022-z.
3
Regulatory function of interferon-inducible 44-like for hepatitis B virus covalently closed circular DNA in primary human hepatocytes.
乙型肝炎病毒动力学建模及cccDNA在原代人肝细胞中的积累
JHEP Rep. 2024 Dec 24;7(4):101311. doi: 10.1016/j.jhepr.2024.101311. eCollection 2025 Apr.
4
Modeling of hepatitis B virus infection spread in primary human hepatocytes.乙型肝炎病毒感染在原代人肝细胞中传播的建模。
bioRxiv. 2025 Feb 7:2025.02.05.636596. doi: 10.1101/2025.02.05.636596.
5
Prediction of cccDNA dynamics in hepatitis B patients by a combination of serum surrogate markers.联合血清替代标志物预测乙型肝炎患者cccDNA动态变化
PLoS Comput Biol. 2025 Jan 9;21(1):e1012615. doi: 10.1371/journal.pcbi.1012615. eCollection 2025 Jan.
6
Disease Progression Mathematical Modeling With a Case Study on Hepatitis B Virus Infection.疾病进展的数学建模及乙肝病毒感染案例研究
CPT Pharmacometrics Syst Pharmacol. 2025 Mar;14(3):420-434. doi: 10.1002/psp4.13298. Epub 2024 Dec 27.
7
A multiscale model of the action of a capsid assembly modulator for the treatment of chronic hepatitis B.一种用于治疗慢性乙型肝炎的衣壳组装调节剂作用的多尺度模型。
bioRxiv. 2024 Jul 16:2024.07.16.603658. doi: 10.1101/2024.07.16.603658.
8
Incorporating Intracellular Processes in Virus Dynamics Models.将细胞内过程纳入病毒动力学模型。
Microorganisms. 2024 Apr 30;12(5):900. doi: 10.3390/microorganisms12050900.
干扰素诱导的44样蛋白对原代人肝细胞中乙型肝炎病毒共价闭合环状DNA的调控作用
Hepatol Res. 2022 Feb;52(2):141-152. doi: 10.1111/hepr.13722. Epub 2021 Nov 15.
4
Ubiquitous expression of HBsAg from integrated HBV DNA in patients with low viral load.低病毒载量患者中整合的乙肝病毒DNA所产生的乙肝表面抗原的普遍表达。
J Hepatol. 2021 Oct;75(4):840-847. doi: 10.1016/j.jhep.2021.04.051. Epub 2021 May 15.
5
Understanding Hepatitis B Virus Dynamics and the Antiviral Effect of Interferon Alpha Treatment in Humanized Chimeric Mice.了解乙型肝炎病毒动力学和人源化嵌合小鼠中干扰素α治疗的抗病毒作用。
J Virol. 2021 Jun 24;95(14):e0049220. doi: 10.1128/JVI.00492-20.
6
Therapeutic shutdown of HBV transcripts promotes reappearance of the SMC5/6 complex and silencing of the viral genome in vivo.HBV 转录物的治疗性失活可促进 SMC5/6 复合物的重新出现,并在体内沉默病毒基因组。
Gut. 2022 Feb;71(2):372-381. doi: 10.1136/gutjnl-2020-322571. Epub 2021 Jan 28.
7
Understanding the antiviral effects of RNAi-based therapy in HBeAg-positive chronic hepatitis B infection.了解 RNAi 为基础的治疗在 HBeAg 阳性慢性乙型肝炎感染中的抗病毒作用。
Sci Rep. 2021 Jan 8;11(1):200. doi: 10.1038/s41598-020-80594-6.
8
Quantification and epigenetic evaluation of the residual pool of hepatitis B covalently closed circular DNA in long-term nucleoside analogue-treated patients.长期核苷类似物治疗患者乙型肝炎共价闭合环状 DNA 残余池的定量和表观遗传评估。
Sci Rep. 2020 Dec 3;10(1):21097. doi: 10.1038/s41598-020-78001-1.
9
What drives the dynamics of HBV RNA during treatment?HBV RNA 在治疗过程中的动态变化受什么驱动?
J Viral Hepat. 2021 Feb;28(2):383-392. doi: 10.1111/jvh.13425. Epub 2020 Nov 2.
10
Should a viral genome stay in the host cell or leave? A quantitative dynamics study of how hepatitis C virus deals with this dilemma.病毒基因组应该留在宿主细胞内还是离开?一项关于丙型肝炎病毒如何应对这一两难困境的定量动力学研究。
PLoS Biol. 2020 Jul 30;18(7):e3000562. doi: 10.1371/journal.pbio.3000562. eCollection 2020 Jul.