Zadi Seema, Javaid Sumaira, Zafar Humaira, Awais Muhammad, Maslennikov Innokentiy, Choudhary M Iqbal
Dr. Panjwani Center for Molecular Medicine and Drug Research, International Center of Chemical and Biological Sciences, University of Karachi, Karachi, 75270, Pakistan.
School of Pharmacy, Chapman University Irvine, CA, 92866, USA.
Heliyon. 2024 Feb 23;10(5):e26345. doi: 10.1016/j.heliyon.2024.e26345. eCollection 2024 Mar 15.
Ubiquitin-specific protease7 (USP7) regulates the stability of the p53 tumor suppressor protein and several other proteins critical for tumor cell survival. Aberrant expression of USP7 facilitates human malignancies by altering the activity of proto-oncogenes/proteins, and tumor suppressor genes. Therefore, USP7 is a validated anti-cancer drug target. In this study, a drug repurposing approach was used to identify new hits against the USP7 enzyme. It is one of the most strategic approaches to find new uses for drugs in a cost- and time-effective way. Nuclear Magnetic Resonance-based screening of 172 drugs identified 11 compounds that bind to the catalytic domain of USP7 with dissociation constant () values in the range of 0.6-1.49 mM. These 11 compounds could thermally destabilize the USP7 enzyme by decreasing its melting temperature up to 9 °C. Molecular docking and simulation studies provided structural insights into the ligand-protein complexes, suggesting that these compounds bind to the putative substrate binding pocket of USP7, and interact with its catalytically important residues. Among the identified 11 hits, compound (oxybutynin), (ketotifen), (pantoprazole sodium), and (escitalopram) also showed anti-cancer activity with an effect on the expression of proto-oncogenes and tumor-suppressor gene at mRNA level in HCT116 cells. The compounds identified in this study can serve as potential leads for further studies.
泛素特异性蛋白酶7(USP7)调节p53肿瘤抑制蛋白以及其他几种对肿瘤细胞存活至关重要的蛋白质的稳定性。USP7的异常表达通过改变原癌基因/蛋白质和肿瘤抑制基因的活性促进人类恶性肿瘤的发生。因此,USP7是一个经过验证的抗癌药物靶点。在本研究中,采用药物重新利用的方法来鉴定针对USP7酶的新的有效化合物。这是以具有成本效益和时间效益的方式寻找药物新用途的最具策略性的方法之一。基于核磁共振对172种药物进行筛选,鉴定出11种化合物,它们与USP7的催化结构域结合,解离常数()值在0.6 - 1.49 mM范围内。这11种化合物可通过将USP7酶的解链温度降低多达9°C使其热不稳定。分子对接和模拟研究为配体 - 蛋白质复合物提供了结构见解,表明这些化合物与USP7的假定底物结合口袋结合,并与其催化重要残基相互作用。在鉴定出的11种有效化合物中,化合物(奥昔布宁)、(酮替芬)、(泮托拉唑钠)和(艾司西酞普兰)在HCT116细胞中也显示出抗癌活性,对原癌基因和肿瘤抑制基因的mRNA水平表达有影响。本研究中鉴定出的化合物可作为进一步研究的潜在先导物。