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一种α,δ-肽折叠体螺旋的晶体结构与核磁共振研究表明,其侧链位置利于双功能催化:作为简约型醛缩酶模拟物的应用

Crystal Structure and NMR of an α,δ-Peptide Foldamer Helix Shows Side-Chains are Well Placed for Bifunctional Catalysis: Application as a Minimalist Aldolase Mimic.

作者信息

Lin Qi, Lan Hao, Ma Chunmiao, Stendall Ryan T, Shankland Kenneth, Musgrave Rebecca A, Horton Peter N, Baldauf Carsten, Hofmann Hans-Jörg, Butts Craig P, Müller Manuel M, Cobb Alexander J A

机构信息

Department of Chemistry King's College London 7 Trinity Street London SE1 1DB UK.

School of Chemistry University of Bristol Cantocks Close Bristol BS8 1TS UK.

出版信息

Angew Chem Weinheim Bergstr Ger. 2023 Sep 4;135(36):e202305326. doi: 10.1002/ange.202305326. Epub 2023 Jun 14.

DOI:10.1002/ange.202305326
PMID:38516402
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10952562/
Abstract

We report the first NMR and X-ray diffraction (XRD) structures of an unusual 13/11-helix (alternating i, i+1 {NH-O=C} and i, i+3 {C=O-H-N} H-bonds) formed by a heteromeric 1 : 1 sequence of α- and δ-amino acids, and demonstrate the application of this framework towards catalysis. Whilst intramolecular hydrogen bonds (IMHBs) are the clear driver of helix formation in this system, we also observe an apolar interaction between the ethyl residue of one δ-amino acid and the cyclohexyl group of the next δ-residue in the sequence that seems to stabilize one type of helix over another. To the best of our knowledge this type of additional stabilization leading to a specific helical preference has not been observed before. Critically, the helix type realized places the α-residue functionalities in positions proximal enough to engage in bifunctional catalysis as demonstrated in the application of our system as a minimalist aldolase mimic.

摘要

我们报道了由α-氨基酸和δ-氨基酸的1:1异源序列形成的不寻常的13/11螺旋(交替的i,i + 1 {NH - O = C}和i,i + 3 {C = O - H - N}氢键)的首个核磁共振(NMR)和X射线衍射(XRD)结构,并展示了该框架在催化方面的应用。虽然分子内氢键(IMHBs)是该体系中螺旋形成的明确驱动力,但我们还观察到一个δ-氨基酸的乙基残基与序列中下一个δ-残基的环己基之间存在非极性相互作用,这种相互作用似乎使一种螺旋比另一种更稳定。据我们所知,以前尚未观察到这种导致特定螺旋偏好的额外稳定作用类型。至关重要的是,所形成的螺旋类型将α-残基官能团置于足够近的位置,以便参与双功能催化,这在我们将该体系用作简约型醛缩酶模拟物的应用中得到了证明。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/08d2/10952562/485e55c873c5/ANGE-135-0-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/08d2/10952562/99d31d557b38/ANGE-135-0-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/08d2/10952562/63f0fecdbb41/ANGE-135-0-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/08d2/10952562/d268a0103cce/ANGE-135-0-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/08d2/10952562/89530bd991a1/ANGE-135-0-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/08d2/10952562/87535974eb0b/ANGE-135-0-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/08d2/10952562/d699fd898b92/ANGE-135-0-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/08d2/10952562/485e55c873c5/ANGE-135-0-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/08d2/10952562/99d31d557b38/ANGE-135-0-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/08d2/10952562/63f0fecdbb41/ANGE-135-0-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/08d2/10952562/d268a0103cce/ANGE-135-0-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/08d2/10952562/89530bd991a1/ANGE-135-0-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/08d2/10952562/87535974eb0b/ANGE-135-0-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/08d2/10952562/d699fd898b92/ANGE-135-0-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/08d2/10952562/485e55c873c5/ANGE-135-0-g003.jpg

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本文引用的文献

1
Crystal Structure and NMR of an α,δ-Peptide Foldamer Helix Shows Side-Chains are Well Placed for Bifunctional Catalysis: Application as a Minimalist Aldolase Mimic.α,δ-肽折叠体螺旋的晶体结构和 NMR 研究表明侧链适合双功能催化:作为最小的醛缩酶模拟物的应用。
Angew Chem Int Ed Engl. 2023 Sep 4;62(36):e202305326. doi: 10.1002/anie.202305326. Epub 2023 Jun 14.
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Conformationally Controlled Linear and Helical Hydrocarbons Bearing Extended Side Chains.具有伸展侧链的构象控制线性和螺旋碳氢化合物。
J Am Chem Soc. 2021 Oct 13;143(40):16682-16692. doi: 10.1021/jacs.1c07778. Epub 2021 Sep 30.
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Foldamer Catalysis.
折叠体催化。
J Am Chem Soc. 2020 Oct 14;142(41):17211-17223. doi: 10.1021/jacs.0c07347. Epub 2020 Sep 29.
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Allosteric Recognition of Homomeric and Heteromeric Pairs of Monosaccharides by a Foldamer Capsule.折叠体胶囊对同型和异型单糖对的别构识别。
Angew Chem Int Ed Engl. 2020 Mar 27;59(14):5797-5805. doi: 10.1002/anie.201914929. Epub 2020 Feb 3.
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Foldamer-templated catalysis of macrocycle formation.折叠体模板催化大环形成。
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Organocatalytic Access to a -Cyclopentyl-γ-amino Acid: An Intriguing Model of Selectivity and Formation of a Stable 10/12-Helix from the Corresponding γ/α-Peptide.有机催化合成 α-环戊基-γ-氨基酸:对相应 γ/α-肽形成稳定的 10/12-螺旋的选择性和形成的有趣模型。
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