Kang Jaedong, Lee Yunbeom, Lee Seonggon, Ki Hosung, Kim Jungmin, Gu Jain, Cha Yongjun, Heo Jun, Lee Kyung Won, Kim Seong Ok, Park Jaehyun, Park Sang-Youn, Kim Sangsoo, Ma Rory, Eom Intae, Kim Minseok, Kim Jeongho, Lee Jae Hyuk, Ihee Hyotcherl
Department of Chemistry and KI for the BioCentury, Korea Advanced Institute of Science and Technology (KAIST), Daejeon, Republic of Korea.
Center for Advanced Reaction Dynamics, Institute for Basic Science (IBS), Daejeon, Republic of Korea.
Nat Chem. 2024 May;16(5):693-699. doi: 10.1038/s41557-024-01460-w. Epub 2024 Mar 25.
Crystalline systems consisting of small-molecule building blocks have emerged as promising materials with diverse applications. It is of great importance to characterize not only their static structures but also the conversion of their structures in response to external stimuli. Femtosecond time-resolved crystallography has the potential to probe the real-time dynamics of structural transitions, but, thus far, this has not been realized for chemical reactions in non-biological crystals. In this study, we applied time-resolved serial femtosecond crystallography (TR-SFX), a powerful technique for visualizing protein structural dynamics, to a metal-organic framework, consisting of Fe porphyrins and hexazirconium nodes, and elucidated its structural dynamics. The time-resolved electron density maps derived from the TR-SFX data unveil trifurcating structural pathways: coherent oscillatory movements of Zr and Fe atoms, a transient structure with the Fe porphyrins and Zr nodes undergoing doming and disordering movements, respectively, and a vibrationally hot structure with isotropic structural disorder. These findings demonstrate the feasibility of using TR-SFX to study chemical systems.
由小分子构建单元组成的晶体系统已成为具有多种应用前景的材料。不仅表征其静态结构,而且表征其结构响应外部刺激的转变都非常重要。飞秒时间分辨晶体学有潜力探测结构转变的实时动力学,但迄今为止,这在非生物晶体中的化学反应中尚未实现。在本研究中,我们将时间分辨连续飞秒晶体学(TR-SFX)——一种用于可视化蛋白质结构动力学的强大技术——应用于由铁卟啉和六锆节点组成的金属有机框架,并阐明了其结构动力学。从TR-SFX数据得出的时间分辨电子密度图揭示了三条分叉的结构路径:锆和铁原子的相干振荡运动、一种瞬态结构,其中铁卟啉和锆节点分别经历隆起和无序运动,以及一种具有各向同性结构无序的振动热结构。这些发现证明了使用TR-SFX研究化学系统的可行性。