Instituto de Medicina Molecular João Lobo Antunes, Faculdade de Medicina, Universidade de Lisboa, Lisbon, Portugal.
Elife. 2024 Mar 28;12:RP88623. doi: 10.7554/eLife.88623.
We herein introduce voyAGEr, an online graphical interface to explore age-related gene expression alterations in 49 human tissues. voyAGEr offers a visualisation and statistical toolkit for the finding and functional exploration of sex- and tissue-specific transcriptomic changes with age. In its conception, we developed a novel bioinformatics pipeline leveraging RNA sequencing data, from the GTEx project, encompassing more than 900 individuals. voyAGEr reveals transcriptomic signatures of the known asynchronous ageing between tissues, allowing the observation of tissue-specific age periods of major transcriptional changes, associated with alterations in different biological pathways, cellular composition, and disease conditions. Notably, voyAGEr was created to assist researchers with no expertise in bioinformatics, providing a supportive framework for elaborating, testing and refining their hypotheses on the molecular nature of human ageing and its association with pathologies, thereby also aiding in the discovery of novel therapeutic targets. voyAGEr is freely available at https://compbio.imm.medicina.ulisboa.pt/app/voyAGEr.
我们在此介绍 voyAGEr,这是一个在线图形界面,用于探索 49 个人体组织中与年龄相关的基因表达变化。voyAGEr 提供了一个可视化和统计工具包,用于发现和功能探索性别和组织特异性转录组随年龄变化。在其构想中,我们开发了一种新颖的生物信息学管道,利用来自 GTEx 项目的 RNA 测序数据,该项目包含超过 900 个人。voyAGEr 揭示了组织间已知异步老化的转录组特征,允许观察与不同生物学途径、细胞组成和疾病状况改变相关的主要转录变化的组织特异性时期。值得注意的是,voyAGEr 的创建是为了帮助没有生物信息学专业知识的研究人员,为他们在人类衰老的分子本质及其与病理学的关联方面的假设提供一个支持性框架,从而也有助于发现新的治疗靶点。voyAGEr 可在 https://compbio.imm.medicina.ulisboa.pt/app/voyAGEr 免费获得。