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基于多项式强度变换的 T1 加权 MRI 稳健丘脑核分割。

Robust thalamic nuclei segmentation from T1-weighted MRI using polynomial intensity transformation.

机构信息

CNRS, CerCo (Brain and Cognition Research Center), Paul Sabatier University, Toulouse, France.

INSERM, ToNiC (Toulouse NeuroImaging Center), Paul Sabatier University, Toulouse, France.

出版信息

Brain Struct Funct. 2024 Jun;229(5):1087-1101. doi: 10.1007/s00429-024-02777-5. Epub 2024 Mar 28.


DOI:10.1007/s00429-024-02777-5
PMID:38546872
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11147736/
Abstract

Accurate segmentation of thalamic nuclei, crucial for understanding their role in healthy cognition and in pathologies, is challenging to achieve on standard T1-weighted (T1w) magnetic resonance imaging (MRI) due to poor image contrast. White-matter-nulled (WMn) MRI sequences improve intrathalamic contrast but are not part of clinical protocols or extant databases. In this study, we introduce histogram-based polynomial synthesis (HIPS), a fast preprocessing transform step that synthesizes WMn-like image contrast from standard T1w MRI using a polynomial approximation for intensity transformation. HIPS was incorporated into THalamus Optimized Multi-Atlas Segmentation (THOMAS) pipeline, a method developed and optimized for WMn MRI. HIPS-THOMAS was compared to a convolutional neural network (CNN)-based segmentation method and THOMAS modified for the use of T1w images (T1w-THOMAS). The robustness and accuracy of the three methods were tested across different image contrasts (MPRAGE, SPGR, and MP2RAGE), scanner manufacturers (PHILIPS, GE, and Siemens), and field strengths (3 T and 7 T). HIPS-transformed images improved intra-thalamic contrast and thalamic boundaries, and HIPS-THOMAS yielded significantly higher mean Dice coefficients and reduced volume errors compared to both the CNN method and T1w-THOMAS. Finally, all three methods were compared using the frequently travelling human phantom MRI dataset for inter- and intra-scanner variability, with HIPS displaying the least inter-scanner variability and performing comparably with T1w-THOMAS for intra-scanner variability. In conclusion, our findings highlight the efficacy and robustness of HIPS in enhancing thalamic nuclei segmentation from standard T1w MRI.

摘要

准确分割丘脑核对于理解其在健康认知和病理学中的作用至关重要,但由于图像对比度差,在标准 T1 加权(T1w)磁共振成像(MRI)上实现这一目标具有挑战性。白质消除(WMn)MRI 序列可提高丘脑内对比度,但不属于临床方案或现有数据库的一部分。在这项研究中,我们引入了基于直方图的多项式合成(HIPS),这是一种快速预处理变换步骤,使用强度变换的多项式逼近从标准 T1w MRI 中合成 WMn 样图像对比度。HIPS 被纳入 THalamus Optimized Multi-Atlas Segmentation(THOMAS)管道,这是一种为 WMn MRI 开发和优化的方法。HIPS-THOMAS 与基于卷积神经网络(CNN)的分割方法和为使用 T1w 图像(T1w-THOMAS)而修改的 THOMAS 进行了比较。这三种方法的稳健性和准确性在不同的图像对比度(MPRAGE、SPGR 和 MP2RAGE)、扫描仪制造商(PHILIPS、GE 和 Siemens)和场强(3T 和 7T)下进行了测试。HIPS 转换后的图像提高了丘脑内的对比度和丘脑边界,与 CNN 方法和 T1w-THOMAS 相比,HIPS-THOMAS 产生的平均 Dice 系数显著更高,体积误差更小。最后,使用经常旅行的人体幻影 MRI 数据集对三种方法进行了比较,以评估它们在扫描仪间和扫描仪内的变异性,HIPS 显示出最小的扫描仪间变异性,并且在扫描仪内变异性方面与 T1w-THOMAS 表现相当。总之,我们的研究结果突出了 HIPS 在增强标准 T1w MRI 中丘脑核分割的有效性和稳健性。

相似文献

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Robust thalamic nuclei segmentation from T1-weighted MRI using polynomial intensity transformation.

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[2]
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[3]
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[4]
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[5]
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[6]
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[7]
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[8]
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[9]
Automatic segmentation of the thalamus using a massively trained 3D convolutional neural network: higher sensitivity for the detection of reduced thalamus volume by improved inter-scanner stability.

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[3]
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[4]
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[5]
Interindividual Variability In Memory Performance Is Related To Cortico-Thalamic Networks During Memory Encoding And Retrieval.

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[6]
Thalamic nuclei segmentation from T1-weighted MRI: Unifying and benchmarking state-of-the-art methods.

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[7]
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[8]
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[9]
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本文引用的文献

[1]
Automatic segmentation of the thalamus using a massively trained 3D convolutional neural network: higher sensitivity for the detection of reduced thalamus volume by improved inter-scanner stability.

Eur Radiol. 2023-3

[2]
Multi-atlas thalamic nuclei segmentation on standard T1-weighed MRI with application to normal aging.

Hum Brain Mapp. 2023-2-1

[3]
Convolutional Neural Network Based Frameworks for Fast Automatic Segmentation of Thalamic Nuclei from Native and Synthesized Contrast Structural MRI.

Neuroinformatics. 2022-7

[4]
Structural Changes in Thalamic Nuclei Across Prodromal and Clinical Alzheimer's Disease.

J Alzheimers Dis. 2021

[5]
Improved Vim targeting for focused ultrasound ablation treatment of essential tremor: A probabilistic and patient-specific approach.

Hum Brain Mapp. 2020-12

[6]
Sensitivity of ventrolateral posterior thalamic nucleus to back pain in alcoholism and CD4 nadir in HIV.

Hum Brain Mapp. 2020-4-1

[7]
Generation of human thalamus atlases from 7 T data and application to intrathalamic nuclei segmentation in clinical 3 T T1-weighted images.

Magn Reson Imaging. 2019-10-16

[8]
Thalamus Optimized Multi Atlas Segmentation (THOMAS): fast, fully automated segmentation of thalamic nuclei from structural MRI.

Neuroimage. 2019-3-17

[9]
A probabilistic atlas of the human thalamic nuclei combining ex vivo MRI and histology.

Neuroimage. 2018-8-17

[10]
Surgical treatment of thalamic tumors in children.

J Neurosurg Pediatr. 2018-3

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