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对白质束分割自动化方法的系统综述。

A systematic review of automated methods to perform white matter tract segmentation.

作者信息

Joshi Ankita, Li Hailong, Parikh Nehal A, He Lili

机构信息

Imaging Research Center, Department of Radiology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, United States.

Neurodevelopmental Disorders Prevention Center, Perinatal Institute, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, United States.

出版信息

Front Neurosci. 2024 Mar 19;18:1376570. doi: 10.3389/fnins.2024.1376570. eCollection 2024.

DOI:10.3389/fnins.2024.1376570
PMID:38567281
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10985163/
Abstract

White matter tract segmentation is a pivotal research area that leverages diffusion-weighted magnetic resonance imaging (dMRI) for the identification and mapping of individual white matter tracts and their trajectories. This study aims to provide a comprehensive systematic literature review on automated methods for white matter tract segmentation in brain dMRI scans. Articles on PubMed, ScienceDirect [NeuroImage, NeuroImage (Clinical), Medical Image Analysis], Scopus and IEEEXplore databases and Conference proceedings of Medical Imaging Computing and Computer Assisted Intervention Society (MICCAI) and International Symposium on Biomedical Imaging (ISBI), were searched in the range from January 2013 until September 2023. This systematic search and review identified 619 articles. Adhering to the specified search criteria using the query, " OR OR fiber OR OR OR 59 published studies were selected. Among these, 27% employed direct voxel-based methods, 25% applied streamline-based clustering methods, 20% used streamline-based classification methods, 14% implemented atlas-based methods, and 14% utilized hybrid approaches. The paper delves into the research gaps and challenges associated with each of these categories. Additionally, this review paper illuminates the most frequently utilized public datasets for tract segmentation along with their specific characteristics. Furthermore, it presents evaluation strategies and their key attributes. The review concludes with a detailed discussion of the challenges and future directions in this field.

摘要

白质束分割是一个关键的研究领域,它利用扩散加权磁共振成像(dMRI)来识别和绘制个体白质束及其轨迹。本研究旨在对脑dMRI扫描中白质束分割的自动化方法进行全面系统的文献综述。检索了PubMed、ScienceDirect[《神经影像学》《神经影像学(临床版)》《医学图像分析》]、Scopus和IEEEXplore数据库以及医学影像计算与计算机辅助干预学会(MICCAI)和生物医学成像国际研讨会(ISBI)的会议论文集,检索范围为2013年1月至2023年9月。通过此次系统检索和综述,共识别出619篇文章。使用查询词“OR OR fiber OR OR OR”遵循指定的搜索标准,最终筛选出59项已发表的研究。其中,27%采用基于体素的直接方法,25%应用基于流线的聚类方法,20%使用基于流线的分类方法,14%实施基于图谱的方法,14%采用混合方法。本文深入探讨了与这些类别相关的研究差距和挑战。此外,这篇综述文章还介绍了用于束分割的最常用公共数据集及其具体特征。此外,还介绍了评估策略及其关键属性。综述最后详细讨论了该领域的挑战和未来方向。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a7a2/10985163/e88fc77f95e0/fnins-18-1376570-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a7a2/10985163/5ab21a170eac/fnins-18-1376570-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a7a2/10985163/37e0f3b27fea/fnins-18-1376570-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a7a2/10985163/37b4f863d78c/fnins-18-1376570-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a7a2/10985163/450b9f570db7/fnins-18-1376570-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a7a2/10985163/b110fa1d014c/fnins-18-1376570-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a7a2/10985163/e88fc77f95e0/fnins-18-1376570-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a7a2/10985163/5ab21a170eac/fnins-18-1376570-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a7a2/10985163/37e0f3b27fea/fnins-18-1376570-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a7a2/10985163/37b4f863d78c/fnins-18-1376570-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a7a2/10985163/450b9f570db7/fnins-18-1376570-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a7a2/10985163/b110fa1d014c/fnins-18-1376570-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a7a2/10985163/e88fc77f95e0/fnins-18-1376570-g006.jpg

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本文引用的文献

1
One-shot segmentation of novel white matter tracts via extensive data augmentation and adaptive knowledge transfer.通过广泛的数据增强和自适应知识转移实现新型白质束的一次性分割。
Med Image Anal. 2023 Dec;90:102968. doi: 10.1016/j.media.2023.102968. Epub 2023 Sep 15.
2
FIESTA: Autoencoders for accurate fiber segmentation in tractography.FIESTA:用于轨迹追踪中纤维精确分割的自动编码器。
Neuroimage. 2023 Oct 1;279:120288. doi: 10.1016/j.neuroimage.2023.120288. Epub 2023 Jul 24.
3
Informative and Reliable Tract Segmentation for Preoperative Planning.
用于术前规划的信息丰富且可靠的 tract 分割
Front Radiol. 2022 May 18;2:866974. doi: 10.3389/fradi.2022.866974. eCollection 2022.
4
Deep Learning Methods for Identification of White Matter Fiber Tracts: Review of State-of-the-Art and Future Prospective.深度学习方法在白质纤维束识别中的应用:现状综述及未来展望。
Neuroinformatics. 2023 Jul;21(3):517-548. doi: 10.1007/s12021-023-09636-4. Epub 2023 Jun 17.
5
Deep fiber clustering: Anatomically informed fiber clustering with self-supervised deep learning for fast and effective tractography parcellation.深度纤维聚类:基于自监督深度学习的解剖学信息纤维聚类,用于快速有效的束路分割。
Neuroimage. 2023 Jun;273:120086. doi: 10.1016/j.neuroimage.2023.120086. Epub 2023 Apr 3.
6
Superficial white matter analysis: An efficient point-cloud-based deep learning framework with supervised contrastive learning for consistent tractography parcellation across populations and dMRI acquisitions.基于点云的浅层白质分析:一种高效的监督对比学习深度学习框架,用于在人群和 dMRI 采集之间实现一致的轨迹分段。
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TractoInferno - A large-scale, open-source, multi-site database for machine learning dMRI tractography.TractoInferno - 一个大规模的、开源的、多站点的机器学习 dMRI 束示踪数据库。
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