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3-[2-(吗啉-4-基)乙基]-5,5-二苯基咪唑烷-2,4-二酮的晶体结构、 Hirshfeld表面分析、晶体空隙计算、相互作用能和能量框架以及密度泛函理论(DFT)计算

Crystal structure, Hirshfeld surface analysis, calculations of crystal voids, inter-action energy and energy frameworks as well as density functional theory (DFT) calculations of 3-[2-(morpholin-4-yl)eth-yl]-5,5-di-phenyl-imidazolidine-2,4-dione.

作者信息

Lamssane Houda, Haoudi Amal, Kartah Badr Eddine, Mazzah Ahmed, Mague Joel T, Hökelek Tuncer, Kandri Rodi Youssef, Sebbar Nada Kheira

机构信息

Laboratory of Applied Organic Chemistry, Sidi Mohamed Ben Abdellah University, Faculty Of Science And Technology, Road Immouzer, BP 2202 Fez, Morocco.

Laboratory of Plant Chemistry, Organic and Bioorganic Synthesis, Faculty of Sciences, Mohammed V University in Rabat, 4 Avenue Ibn Battouta BP 1014 RP, Morocco.

出版信息

Acta Crystallogr E Crystallogr Commun. 2024 Mar 26;80(Pt 4):423-429. doi: 10.1107/S2056989024002445. eCollection 2024 Mar 1.

Abstract

In the title mol-ecule, CHNO, the imidazolidine ring slightly deviates from planarity and the morpholine ring exhibits the chair conformation. In the crystal, N-H⋯O and C-H⋯O hydrogen bonds form helical chains of mol-ecules extending parallel to the axis that are connected by C-H⋯π(ring) inter-actions. A Hirshfeld surface analysis reveals that the most important contributions for the crystal packing are from H⋯H (55.2%), H⋯C/C⋯H (22.6%) and H⋯O/O⋯H (20.5%) inter-actions. The volume of the crystal voids and the percentage of free space were calculated to be 236.78 Å and 12.71%, respectively. Evaluation of the electrostatic, dispersion and total energy frameworks indicates that the stabilization is dominated by the nearly equal electrostatic and dispersion energy contributions. The DFT-optimized mol-ecular structure at the B3LYP/6-311 G(d,p) level is compared with the experimentally determined mol-ecular structure in the solid state. Moreover, the HOMO-LUMO behaviour was elucidated to determine the energy gap.

摘要

在标题分子CHNO中,咪唑烷环略微偏离平面,吗啉环呈椅式构象。在晶体中,N-H⋯O和C-H⋯O氢键形成平行于 轴延伸的分子螺旋链,这些链通过C-H⋯π(环)相互作用相连。 Hirshfeld表面分析表明,晶体堆积的最重要贡献来自H⋯H(55.2%)、H⋯C/C⋯H(22.6%)和H⋯O/O⋯H(20.5%)相互作用。计算得出晶体空隙体积和自由空间百分比分别为236.78 Å和12.71%。对静电、色散和总能量框架的评估表明,稳定性主要由几乎相等的静电和色散能量贡献主导。将B3LYP/6-311 G(d,p)水平下DFT优化的分子结构与固态下实验测定的分子结构进行了比较。此外,还阐明了HOMO-LUMO行为以确定能隙。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/20bf/10993604/6814a4e55c36/e-80-00423-fig1.jpg

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