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揭示猕猴桃 TCP 基因:进化、功能和表达见解。

Unveiling kiwifruit TCP genes: evolution, functions, and expression insights.

机构信息

College of Biology and Agriculture, Shaoguan University, Shaoguan, Guangdong, China.

出版信息

Plant Signal Behav. 2024 Dec 31;19(1):2338985. doi: 10.1080/15592324.2024.2338985. Epub 2024 Apr 10.

Abstract

The (TCP) gene family is a plant-specific transcriptional factor family involved in leaf morphogenesis and senescence, lateral branching, hormone crosstalk, and stress responses. To date, a systematic study on the identification and characterization of the gene family in kiwifruit has not been reported. Additionally, the function of kiwifruit TCPs in regulating kiwifruit responses to the ethylene treatment and bacterial canker disease pathogen ( pv. , Psa) has not been investigated. Here, we identified 40 and 26 genes in (Ac) and (Ae) genomes, respectively. The synteny analysis of illustrated that whole-genome duplication accounted for the expansion of the family in Ac. Phylogenetic, conserved domain, and selection pressure analysis indicated that family genes in Ac and Ae had undergone different evolutionary patterns after whole-genome duplication (WGD) events, causing differences in gene number and distribution. Our results also suggested that protein structure and -element architecture in promoter regions of TCP genes have driven the function divergence of duplicated gene pairs. Three and four genes significantly affected kiwifruit responses to the ethylene treatment and Psa invasion, respectively. Our results provided insight into general characters, evolutionary patterns, and functional diversity of kiwifruit .

摘要

TCP 基因家族是一个植物特有的转录因子家族,参与叶片形态发生和衰老、侧枝分枝、激素串扰以及应激反应。迄今为止,尚未有关于猕猴桃 TCP 基因家族的鉴定和特征描述的系统研究。此外,猕猴桃 TCP 基因在调控猕猴桃对乙烯处理和细菌性溃疡病病原菌( pv. ,Psa)响应方面的功能也尚未得到研究。在这里,我们分别在 (Ac)和 (Ae)基因组中鉴定出 40 个和 26 个 基因。对 的共线性分析表明,全基因组复制导致 Ac 中 家族的扩张。系统发育、保守结构域和选择压力分析表明,Ac 和 Ae 中的 家族基因在全基因组复制(WGD)事件后经历了不同的进化模式,导致基因数量和分布的差异。我们的研究结果还表明,TCP 基因启动子区的蛋白结构和 -元件结构驱动了重复基因对的功能分化。有 3 个和 4 个 基因分别显著影响猕猴桃对乙烯处理和 Psa 侵染的响应。我们的研究结果为猕猴桃 基因的一般特征、进化模式和功能多样性提供了深入了解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c5a7/11008546/1e445d3d86d4/KPSB_A_2338985_F0001_OC.jpg

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