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本文引用的文献

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sp. nov., derived from a human granuloma, which forms black colonies and black halos on modified Tinsdale medium but is not closely related to and related taxa.sp. nov.，来源于人类肉芽肿，在改良的 Tinsdale 培养基上形成黑色菌落和黑色晕环，但与 和相关分类群关系不密切。
Int J Syst Evol Microbiol. 2021 Aug;71(8). doi: 10.1099/ijsem.0.004919.
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Infective Endocarditis Due to Species: Clinical Features and Antibiotic Resistance.由[具体菌种]引起的感染性心内膜炎：临床特征与抗生素耐药性
Open Forum Infect Dis. 2021 Feb 4;8(3):ofab055. doi: 10.1093/ofid/ofab055. eCollection 2021 Mar.
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Population genomics and antimicrobial resistance in Corynebacterium diphtheriae.人瘤病毒与口咽癌
Genome Med. 2020 Nov 27;12(1):107. doi: 10.1186/s13073-020-00805-7.
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Disseminated Corynebacterium jeikeium Infection in Cancer Patients.癌症患者中的播散性杰氏棒状杆菌感染
Cureus. 2020 Jun 22;12(6):e8764. doi: 10.7759/cureus.8764.
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List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ.《具有命名地位的原核生物名称列表》（LPSN）迁至 DSMZ。
Int J Syst Evol Microbiol. 2020 Nov;70(11):5607-5612. doi: 10.1099/ijsem.0.004332. Epub 2020 Jul 23.
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Using SPAdes De Novo Assembler.使用 SPAdes 从头组装。
Curr Protoc Bioinformatics. 2020 Jun;70(1):e102. doi: 10.1002/cpbi.102.
7
sp. nov., a unique group of NTTB corynebacteria in wild boar and roe deer.新种，野猪和狍子中独特的 NTTB 棒状杆菌群。
Int J Syst Evol Microbiol. 2020 Jun;70(6):3614-3624. doi: 10.1099/ijsem.0.004195.
8
Corynebacterium rouxii sp. nov., a novel member of the diphtheriae species complex.鲁氏棒状杆菌新种，白喉菌种复合体的一个新成员。
Res Microbiol. 2020 Apr-Jun;171(3-4):122-127. doi: 10.1016/j.resmic.2020.02.003. Epub 2020 Feb 28.
9
Genomic metrics made easy: what to do and where to go in the new era of bacterial taxonomy.基因组指标轻松搞定：在细菌分类学的新时代该做什么和往何处去。
Crit Rev Microbiol. 2019 Mar;45(2):182-200. doi: 10.1080/1040841X.2019.1569587. Epub 2019 May 31.
10
TYGS is an automated high-throughput platform for state-of-the-art genome-based taxonomy.TYGS 是一个自动化的高通量平台，用于最先进的基于基因组的分类学。
Nat Commun. 2019 May 16;10(1):2182. doi: 10.1038/s41467-019-10210-3.

从人体组织骨中分离到的一株短棒状杆菌的描述，一种棒状杆菌属的新成员。

Description of Corynebacterium hiratae sp. nov. isolated from a human tissue bone a novel member of Corynebacterium Genus.

机构信息

Laboratory of Diphtheria and Corynebacteria of Clinical Relevance, Department of Microbiology, Immunology and Parasitology, State University of Rio de Janeiro, Vinte e Oito de Setembro 87, Fundos, 3º andar. Vila Isabel, Rio de Janeiro, RJ, CEP:20551-030, Brazil.

Army Chemical and Pharmaceutical Laboratory, Ministry of Defense, Brasília, Brazil.

出版信息

Braz J Microbiol. 2024 Jun;55(2):1405-1414. doi: 10.1007/s42770-024-01331-z. Epub 2024 Apr 10.

DOI:10.1007/s42770-024-01331-z
PMID:38598149
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11153448/
Abstract

BACKGROUND

Corynebacterium spp. are widely disseminated in the environment, and they are part of the skin and mucosal microbiota of animals and humans. Reports of human infections by Corynebacterium spp. have increased considerably in recent years and the appearance of multidrug resistant isolates around the world has drawn attention.

OBJECTIVES

To describe a new species of Corynebacterium from human tissue bone is described after being misidentified using available methods.

METHODS

For taxonomic analyses, phylogenetic analysis of 16S rRNA and rpoB genes, in silico DNA-DNA hybridization, average nucleotide and amino acid identity, multilocus sequence analysis, and phylogenetic analysis based on the complete genome were used.

FINDINGS

Genomic taxonomic analyzes revealed values of in silico DNA-DNA hybridization, average nucleotide and amino acids identity below the values necessary for species characterization between the analyzed isolates and the closest phylogenetic relative Corynebacterium aurimucosum DSM 44532.

MAIN CONCLUSIONS

Genomic taxonomic analyzes indicate that the isolates analyzed comprise a new species of the Corynebacterium genus, which we propose to name Corynebacterium hiratae sp. nov. with isolate 332 (= CBAS 826 = CCBH 35,014) as the type strain.

摘要

背景

棒状杆菌属广泛分布于环境中，是动物和人类皮肤和黏膜微生物群的一部分。近年来，人类感染棒状杆菌属的报道显著增加，而世界各地出现的多药耐药分离株引起了关注。

目的

在用现有方法鉴定错误后，描述一种来自人组织骨的新型棒状杆菌。

方法

为了进行分类分析，我们使用了 16S rRNA 和 rpoB 基因的系统发育分析、计算机 DNA-DNA 杂交、平均核苷酸和氨基酸同一性、多位点序列分析以及基于全基因组的系统发育分析。

发现

基因组分类分析显示，分析的分离株与最接近的系统发育相关的棒状杆菌属物种 Corynebacterium aurimucosum DSM 44532 之间的计算机 DNA-DNA 杂交、平均核苷酸和氨基酸同一性值低于物种特征所需的值。

主要结论

基因组分类分析表明，分析的分离株包含棒状杆菌属的一个新种，我们建议将其命名为 Hiratae 棒状杆菌新种，以 332 号分离株（=CBAS 826=CCBH 35,014）为模式株。