In the filamentous ascomycete , at least three high hierarchy transcription factors are required for growth at extracellular alkaline pH: SltA, PacC and CrzA. Transcriptomic profiles depending on alkaline pH and SltA function showed that expression might be under SltA regulation. Additional transcriptional studies of PacC and the only pH-regulated gene, , confirmed both the strong dependence on ambient pH and the function of SltA. The regulation of expression is dependent on the activity of the zinc binuclear (C6) cluster transcription factor PacX. However, we found that the ablation of in the mutant background specifically prevents the increase in expression levels without affecting PacC protein levels, showing a novel specific function of the PacX factor. The loss of function causes the anomalous proteolytic processing of PacC and a reduction in the post-translational modifications of PalF. At alkaline pH, in a null background, PacC accumulates, detection of the intermediate PacC form is extremely low and the final processed form of 27 kDa shows altered electrophoretic mobility. Constitutive ubiquitination of PalF or the presence of alkalinity-mimicking mutations in , such as and , resembling PacC and PacC, respectively, allowed the normal processing of PacC but did not rescue the alkaline pH-sensitive phenotype caused by the null allele. Overall, data show that Slt and PacC/Pal pathways are interconnected, but the transcription factor SltA is on a higher hierarchical level than PacC on regulating the tolerance to the ambient alkalinity in .