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酸对寡核糖核苷酸磷酸三酯中间体的作用。释放的邻位羟基官能团的影响。

Action of acid on oligoribonucleotide phosphotriester intermediates. Effect of released vicinal hydroxy functions.

作者信息

Reese C B, Skone P A

出版信息

Nucleic Acids Res. 1985 Jul 25;13(14):5215-31. doi: 10.1093/nar/13.14.5215.

DOI:10.1093/nar/13.14.5215
PMID:3860798
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC321860/
Abstract

When 2'-O-methoxytetrahydropyranyl-5'-O-(9-phenylxanthen-9-yl) uridylyl-(3'----5')-(2',3'-di-O-acetyluridine) 2-chlorophenyl ester (9) is treated with zinc bromide in dichloromethane-propan-2-ol (85:15 v/v) at room temperature, under stringently anhydrous conditions, the corresponding 5'-unblocked dinucleoside phosphate (10) is obtained in 86% isolated yield; however, when no special precautions are taken to exclude moisture, (10) is obtained in only 72% yield. The removal of the 5'-O-(9-phenylxanthen-9-yl) protecting group from (10) with a protic acid (phenyl dihydrogen phosphate) appears to be much less selective and efficient. 80% Acetic acid promoted removal of the methoxytetrahydropyranyl protecting group from the isomeric fully-protected uridylyl-(3'----5')- and uridylyl-(2'----5')-uridine derivatives [(11) and (21c), respectively] leads to virtually identical mixtures [Figures 1a and 1b, respectively] of the partially-protected dinucleoside phosphates [(14) and (15)], 2',3'-di-O-acetyluridine (8), 5'-O-acetyluridine 2',3'-cyclic phosphate (16), and 5'-O-acetyluridine 2'(3')-phosphates [(18) and (17)].

摘要

当2'-O-甲氧基四氢吡喃基-5'-O-(9-苯基呫吨-9-基)尿苷酰-(3'→5')-(2',3'-二-O-乙酰基尿苷) 2-氯苯酯(9)在室温下于二氯甲烷-丙-2-醇(85:15 v/v)中,在严格无水的条件下用溴化锌处理时,相应的5'-未封闭的二核苷磷酸酯(10)以86%的分离产率得到;然而,当未采取特殊预防措施以排除水分时,(10)的产率仅为72%。用质子酸(苯基磷酸二氢酯)从(10)上去除5'-O-(9-苯基呫吨-9-基)保护基的选择性和效率似乎要低得多。80%的乙酸促进从异构体完全保护的尿苷酰-(3'→5')-和尿苷酰-(2'→5')-尿苷衍生物[(11)和(21c),分别]上去除甲氧基四氢吡喃基保护基,导致部分保护的二核苷磷酸酯[(14)和(15)]、2',3'-二-O-乙酰基尿苷(8)、5'-O-乙酰基尿苷2',3'-环磷酸酯(16)和5'-O-乙酰基尿苷2'(3')-磷酸酯[(18)和(17)]的几乎相同的混合物[分别为图1a和图1b]。

相似文献

1
Action of acid on oligoribonucleotide phosphotriester intermediates. Effect of released vicinal hydroxy functions.酸对寡核糖核苷酸磷酸三酯中间体的作用。释放的邻位羟基官能团的影响。
Nucleic Acids Res. 1985 Jul 25;13(14):5215-31. doi: 10.1093/nar/13.14.5215.
2
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Nucleic Acids Res. 1987 Dec 10;15(23):9921-32. doi: 10.1093/nar/15.23.9921.
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Nucleic Acids Res. 1986 Mar 11;14(5):2171-85. doi: 10.1093/nar/14.5.2171.

引用本文的文献

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2
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Nucleic Acids Res. 1986 Mar 11;14(5):2171-85. doi: 10.1093/nar/14.5.2171.
3
5'-Levulinyl and 2'-tetrahydrofuranyl protection for the synthesis of oligoribonucleotides by the phosphoramidite approach.用于通过亚磷酰胺法合成寡核糖核苷酸的5'-乙酰基和2'-四氢呋喃基保护。
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本文引用的文献

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A new approach to the specific synthesis of the C3'-C5' inter-ribonucleotide linkage.一种特异性合成3'-5'核糖核苷酸间连接键的新方法。
Biochem Biophys Res Commun. 1962 Apr 3;7:147-50. doi: 10.1016/0006-291x(62)90164-x.
2
Some observations relating to the oximate ion promoted unblocking of oligonucleotide aryl esters.一些与肟离子促进寡核苷酸芳基酯解封闭相关的观察结果。
Nucleic Acids Res. 1981 Sep 25;9(18):4611-26. doi: 10.1093/nar/9.18.4611.
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Further studies on oligoribonucleotide synthesis.寡核糖核苷酸合成的进一步研究。
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The synthesis of oligoribonucleotides. IV. Preparation of dinucleoside phosphates from 2',5'-protected ribonucleoside derivatives.寡核糖核苷酸的合成。IV. 由2',5'-保护的核糖核苷衍生物制备二核苷磷酸酯。
Tetrahedron. 1968 Jan;24(2):639-62. doi: 10.1016/0040-4020(68)88015-9.
5
4-methoxytetrahydropyran-4-yl. A symmetrical alternative to the tetrahydropyranyl protecting group.4-甲氧基四氢吡喃-4-基。四氢吡喃基保护基团的一种对称替代物。
Tetrahedron. 1970 Feb;26(4):1023-30. doi: 10.1016/s0040-4020(01)98779-4.
6
Neighbouring group participation in the unblocking of phosphotriesters of nucleic acids.相邻基团参与核酸磷酸三酯的解封闭反应。
Nucleic Acids Res. 1979;6(6):2237-59. doi: 10.1093/nar/6.6.2237.