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黄麻属全基因组鉴定和 velvet 复杂转录因子表达谱分析

Genome-Wide Identification and Expression Profiling of Velvet Complex Transcription Factors in × .

机构信息

State Key Laboratory of Tree Genetics and Breeding, Chinese Academy of Forestry, Beijing 100091, China.

出版信息

Int J Mol Sci. 2024 Mar 31;25(7):3926. doi: 10.3390/ijms25073926.

DOI:10.3390/ijms25073926
PMID:38612736
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11011700/
Abstract

The discovery of new genes with novel functions is a major driver of adaptive evolutionary innovation in plants. Especially in woody plants, due to genome expansion, new genes evolve to regulate the processes of growth and development. In this study, we characterized the unique transcription factor family in × , which is associated with secondary metabolism. Twenty VeA genes were characterized systematically on their phylogeny, genomic distribution, gene structure and conserved motif, promoter binding site, and expression profiling. Furthermore, through ChIP-qPCR, Y1H, and effector-reporter assays, it was demonstrated that PagMYB128 directly regulated to influence the biosynthesis of secondary metabolites. These results provide a basis for further elucidating the function of gene in poplar and its genetic regulation mechanism.

摘要

新基因的发现及其新功能是植物适应性进化创新的主要驱动力。特别是在木本植物中,由于基因组的扩张,新基因进化以调节生长和发育过程。在这项研究中,我们对与次生代谢相关的 × 特有的转录因子家族进行了特征描述。系统地对 20 个 VeA 基因的系统发育、基因组分布、基因结构和保守基序、启动子结合位点和表达谱进行了表征。此外,通过 ChIP-qPCR、Y1H 和效应物报告基因检测,证明 PagMYB128 直接调控 以影响次生代谢物的生物合成。这些结果为进一步阐明杨树中 基因的功能及其遗传调控机制提供了依据。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3c27/11011700/299654be95ae/ijms-25-03926-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3c27/11011700/88d626736ffe/ijms-25-03926-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3c27/11011700/2b8e83f229ed/ijms-25-03926-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3c27/11011700/daa34271c226/ijms-25-03926-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3c27/11011700/36b62685f630/ijms-25-03926-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3c27/11011700/d7fe92ab9f46/ijms-25-03926-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3c27/11011700/299654be95ae/ijms-25-03926-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3c27/11011700/88d626736ffe/ijms-25-03926-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3c27/11011700/2b8e83f229ed/ijms-25-03926-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3c27/11011700/daa34271c226/ijms-25-03926-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3c27/11011700/36b62685f630/ijms-25-03926-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3c27/11011700/d7fe92ab9f46/ijms-25-03926-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3c27/11011700/299654be95ae/ijms-25-03926-g006.jpg

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本文引用的文献

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Molecular understanding of wood formation in trees.对树木木材形成的分子理解。
For Res (Fayettev). 2022 Apr 25;2:5. doi: 10.48130/FR-2022-0005. eCollection 2022.
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Lignin biosynthesis and accumulation in response to abiotic stresses in woody plants.木质植物中木质素生物合成及对非生物胁迫的响应与积累
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Deciphering the intricate hierarchical gene regulatory network: unraveling multi-level regulation and modifications driving secondary cell wall formation.
解析复杂的层次基因调控网络:揭示驱动次生细胞壁形成的多层次调控与修饰
Hortic Res. 2023 Dec 19;11(2):uhad281. doi: 10.1093/hr/uhad281. eCollection 2024 Feb.
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Transcription factor PagMYB31 positively regulates cambium activity and negatively regulates xylem development in poplar.转录因子 PagMYB31 正向调控杨树形成层活动,负向调控木质部发育。
Plant Cell. 2024 May 1;36(5):1806-1828. doi: 10.1093/plcell/koae040.
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Genome-Wide Network Analysis of Above- and Below-Ground Co-growth in .关于……地上与地下共同生长的全基因组网络分析
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Front Plant Sci. 2023 May 30;14:1193065. doi: 10.3389/fpls.2023.1193065. eCollection 2023.
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Unraveling the Gene Regulatory Networks of the Global Regulators VeA and LaeA in Aspergillus nidulans.解析构巢曲霉中全局调控因子VeA和LaeA的基因调控网络
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J Integr Plant Biol. 2023 May;65(5):1134-1146. doi: 10.1111/jipb.13453. Epub 2023 Mar 15.
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