College of Resources and Environmental Sciences, China Agricultural University, Beijing, 100193, PR China.
Beijing Key Laboratory of Biodiversity and Organic Farming, China Agricultural University, Beijing, 100193, PR China.
Int J Syst Evol Microbiol. 2024 Apr;74(4). doi: 10.1099/ijsem.0.006334.
Two Gram-stain-negative bacterial strains, R39 and R73, were isolated from the rhizosphere soil of the selenium hyperaccumulator in China. Strain R39 transformed selenite into elemental and volatile selenium, whereas strain R73 transformed both selenate and selenite into elemental selenium. Phylogenetic and phylogenomic analyses indicated that strain R39 belonged to the genus , while strain R73 belonged to the genus . Strain R39 (genome size, 6.68 Mb; G+C content, 61.6 mol%) showed the closest relationship to LMG 26219 and LMG 3441, with average nucleotide identity (ANI) values of 83.6 and 83.4 %, respectively. Strain R73 (genome size, 5.22 Mb; G+C content, 50.3 mol%) was most closely related to ATCC 51602 with an ANI value of 86.4 %. Furthermore, strain A111 from the GenBank database was found to cluster with strain R73 within the genus through phylogenomic analyses. The ANI and digital DNA-DNA hybridization values between strains R73 and A111 were 97.5 and 80.0% respectively, indicating that they belong to the same species. Phenotypic characteristics also differentiated strain R39 and strain R73 from their closely related species. Based on the polyphasic analyses, strain R39 and strain R73 represent novel species of the genera and , respectively, for which the names sp. nov. (type strain R39=GDMCC 1.3843=JCM 36009) and sp. nov. (type strain R73=GDMCC 1.3636=JCM 35850) are proposed.
两株革兰氏阴性细菌菌株,R39 和 R73,从中国的硒超积累植物根际土壤中分离得到。菌株 R39 将亚硒酸盐转化为元素态和挥发性硒,而菌株 R73 将硒酸盐和亚硒酸盐都转化为元素态硒。系统发育和系统基因组分析表明,菌株 R39 属于 属,而菌株 R73 属于 属。菌株 R39(基因组大小为 6.68 Mb;GC 含量为 61.6 mol%)与 LMG 26219 和 LMG 3441 的亲缘关系最近,平均核苷酸同一性(ANI)值分别为 83.6%和 83.4%。菌株 R73(基因组大小为 5.22 Mb;GC 含量为 50.3 mol%)与 ATCC 51602 的亲缘关系最近,ANI 值为 86.4%。此外,通过系统基因组分析发现,GenBank 数据库中的菌株 A111 与菌株 R73 一起聚类在 属内。菌株 R73 和 A111 之间的 ANI 和数字 DNA-DNA 杂交值分别为 97.5%和 80.0%,表明它们属于同一个种。表型特征也将菌株 R39 和菌株 R73 与它们密切相关的种区分开来。基于多相分析,菌株 R39 和菌株 R73 分别代表 属和 属的新种,其名称分别为 sp. nov.(模式菌株 R39=GDMCC 1.3843=JCM 36009)和 sp. nov.(模式菌株 R73=GDMCC 1.3636=JCM 35850)。