Université Paris-Saclay, INRAE, AgroParisTech, GABI, 78350, Jouy-en-Josas, France.
UMT PrADE, 84914, Avignon, France.
Genet Sel Evol. 2024 Apr 17;56(1):30. doi: 10.1186/s12711-024-00898-3.
Breeding queens may be mated with drones that are produced by a single drone-producing queen (DPQ), or a group of sister-DPQs, but often only the dam of the DPQ(s) is reported in the pedigree. Furthermore, datasets may include colony phenotypes from DPQs that were open-mated at different locations, and thus to a heterogeneous drone population.
Simulation was used to investigate the impact of the mating strategy and its modelling on the estimates of genetic parameters and genetic trends when the DPQs are treated in different ways in the statistical evaluation model. We quantified the bias and standard error of the estimates when breeding queens were mated to one DPQ or a group of DPQs, assuming that this information was known or not. We also investigated four alternative strategies to accommodate the phenotypes of open-mated DPQs in the genetic evaluation: excluding their phenotypes, adding a dummy pseudo-sire in the pedigree, or adding a non-genetic (fixed or random) effect to the statistical evaluation model to account for the origin of the mates.
The most precise estimates of genetic parameters and genetic trends were obtained when breeding queens were mated with drones of single DPQs that are correctly assigned in the pedigree. However, when they were mated with drones from one or a group of DPQs, and this information was not known, erroneous assumptions led to considerable bias in these estimates. Furthermore, genetic variances were considerably overestimated when phenotypes of colonies from open-mated DPQs were adjusted for their mates by adding a dummy pseudo-sire in the pedigree for each subpopulation of open-mating drones. On the contrary, correcting for the heterogeneous drone population by adding a non-genetic effect in the evaluation model produced unbiased estimates.
Knowing only the dam of the DPQ(s) used in each mating may lead to erroneous assumptions on how DPQs were used and severely bias the estimates of genetic parameters and trends. Thus, we recommend keeping track of DPQs in the pedigree, and not only of the dams of DPQ(s). Records from DPQ colonies with queens open-mated to a heterogeneous drone population can be integrated by adding non-genetic effects to the statistical evaluation model.
育王可能与由单个雄蜂生产蜂王(DPQ)或一组姐妹 DPQ 产生的雄蜂交配,但通常在系谱中仅报告 DPQ 的母系。此外,数据集可能包括在不同地点开放交配的 DPQ 的殖民地表型,因此与异质雄蜂群体交配。
模拟用于研究交配策略及其在统计评估模型中对 DPQ 进行不同处理时对遗传参数和遗传趋势估计的影响。我们量化了当育王与一个 DPQ 或一组 DPQ 交配时,当假设知道或不知道这种信息时,估计值的偏差和标准误差。我们还研究了四种替代策略,以适应遗传评估中开放交配 DPQ 的表型:排除它们的表型,在系谱中添加虚拟假父系,或向统计评估模型添加非遗传(固定或随机)效应以说明配偶的来源。
当育王与正确分配在系谱中的单个 DPQ 的雄蜂交配时,获得了遗传参数和遗传趋势最准确的估计。然而,当它们与一个或一组 DPQ 的雄蜂交配,并且不知道这种信息时,错误的假设会导致这些估计值出现相当大的偏差。此外,当通过在系谱中为每个开放交配雄蜂的亚群添加虚拟假父系来调整来自开放交配 DPQ 的殖民地的表型以适应其配偶时,遗传方差被大大高估。相反,通过在评估模型中添加非遗传效应来校正异质雄蜂群体产生了无偏估计。
仅知道在每次交配中使用的 DPQ 的母系可能导致对 DPQ 使用方式的错误假设,并严重偏差遗传参数和趋势的估计。因此,我们建议在系谱中跟踪 DPQ,而不仅仅是 DPQ 的母系。通过向统计评估模型添加非遗传效应,可以整合与异质雄蜂群体开放交配的 DPQ 殖民地的记录。