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玉米 ZmLBD 基因家族的鉴定与表达特征分析。

Characterization and expression profiles of the ZmLBD gene family in Zea mays.

机构信息

Postdoctoral Work Station of Gansu Dunhuang Seed Group Co., Ltd, Jiuquan, 735000, Gansu, China.

Post-Doctoral Research Center of Biology, Lanzhou University, Lanzhou, 730000, Gansu, China.

出版信息

Mol Biol Rep. 2024 Apr 20;51(1):554. doi: 10.1007/s11033-024-09483-9.

Abstract

BACKGROUND

The Lateral Organ Boundaries Domain (LBD) gene family is a family of plant-specific transcription factors (TFs) that are widely involved in processes such as lateral organ formation, stress response, and nutrient metabolism. However, the function of LBD genes in maize remains poorly understood.

METHODS AND RESULTS

In this study, a total of 49 ZmLBD genes were identified at the genome-wide level of maize, they were classified into nine branches based on phylogenetic relationships, and all of them were predicted to be nuclear localized. The 49 ZmLBD genes formed eight pairs of segmental duplicates, and members of the same branches' members had similar gene structure and conserved motif composition. The promoters of ZmLBD genes contain multiple types of cis-acting elements. In addition, by constructing the regulatory network of ZmLBD and other genes and miRNAs, 12 and 22 ZmLBDs were found to be involved in the gene regulatory network and miRNA regulatory network, respectively. The expression pattern analysis suggests that ZmLBD genes may be involved in different biological pathways, and drought stress induced the expressions of two inbred lines.

CONCLUSIONS

The findings enhance our comprehension of the potential roles of the ZmLBD gene family in maize growth and development, which is pivotal for genetic enhancement and breeding efforts pertaining to this significant crop.

摘要

背景

侧生器官边界域(LBD)基因家族是一类植物特异性转录因子(TFs),广泛参与侧生器官形成、应激响应和营养代谢等过程。然而,LBD 基因在玉米中的功能仍知之甚少。

方法和结果

本研究在玉米全基因组水平上鉴定了 49 个 ZmLBD 基因,根据系统发育关系将其分为 9 个分支,所有基因均预测为核定位。49 个 ZmLBD 基因形成了 8 对片段重复,同一分支的成员具有相似的基因结构和保守基序组成。ZmLBD 基因的启动子包含多种类型的顺式作用元件。此外,通过构建 ZmLBD 与其他基因和 miRNA 的调控网络,发现 12 个和 22 个 ZmLBD 分别参与了基因调控网络和 miRNA 调控网络。表达模式分析表明,ZmLBD 基因可能参与不同的生物学途径,干旱胁迫诱导了两个自交系中两个 ZmLBD 的表达。

结论

这些发现增强了我们对 ZmLBD 基因家族在玉米生长发育中潜在作用的理解,这对于该重要作物的遗传改良和育种工作至关重要。

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