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新型需氧兼性厌光光合细菌 Jannaschia pagri sp. nov.,从鱼类养殖场周围的海水中分离得到。

Novel aerobic anoxygenic phototrophic bacterium Jannaschia pagri sp. nov., isolated from seawater around a fish farm.

机构信息

Graduate School of Agricultural and Life Sciences, The University of Tokyo, 1-1-1 Bunkyo-Ku, Tokyo, 113-8657, Japan.

Atmosphere and Ocean Research Institute, The University of Tokyo, Kashiwanoha 5-1-5, Kashiwa, Chiba, 277-8564, Japan.

出版信息

Antonie Van Leeuwenhoek. 2024 Apr 24;117(1):70. doi: 10.1007/s10482-024-01971-z.

DOI:10.1007/s10482-024-01971-z
PMID:38658407
Abstract

The genus Jannaschia is one of the representatives of aerobic anoxygenic phototrophic (AAP) bacteria, which is a strictly aerobic bacterium, producing a photosynthetic pigment bacteriochlorophyll (BChl) a. However, a part of the genus Jannaschia members have not been confirmed the photosynthetic ability. The partly presence of the ability in the genus Jannaschia could suggest the complexity of evolutionary history for anoxygenic photosynthesis in the genus, which is expected as gene loss and/or horizontal gene transfer. Here a novel AAP bacterium designated as strain AI_62 (= DSM 115720 = NBRC 115938), was isolated from coastal seawater around a fish farm in the Uwa Sea, Japan. Its closest relatives were identified as Jannaschia seohaensis SMK-146 (95.6% identity) and J. formosa 12N15 (94.6% identity), which have been reported to produce BChl a. The genomic characteristic of strain AI_62 clearly showed the possession of the anoxygenic photosynthesis related gene sets. This could be a useful model organism to approach the evolutionary mystery of anoxygenic photosynthesis in the genus Jannaschia. Based on a comprehensive consideration of both phylogenetic and phenotypic characteristics, we propose the classification of a novel species within the genus Jannaschia, designated as Jannaschia pagri sp. nov. The type strain for this newly proposed species is AI_62 (= DSM 115720 = NBRC 115938).

摘要

詹纳斯氏菌属是好氧厌氧光合(AAP)细菌的代表之一,它是一种严格需氧的细菌,产生光合色素细菌叶绿素(BChl)a。然而,部分詹纳斯氏菌属成员的光合能力尚未得到证实。詹纳斯氏菌属中部分存在这种能力表明,该属的厌氧光合作用进化历史较为复杂,这可能是由于基因缺失和/或水平基因转移所致。本研究从日本浦安市附近的鱼养殖场周围的沿海水域中分离到一株新型 AAP 细菌,命名为 AI_62 菌株(=DSM 115720=NBRC 115938)。其最接近的亲缘种是 Jannaschia seohaensis SMK-146(95.6%同源性)和 J. formosa 12N15(94.6%同源性),这两种菌已被报道能产生 BChl a。AI_62 菌株的基因组特征清楚地显示出具有厌氧光合作用相关的基因簇。该菌株可作为研究詹纳斯氏菌属厌氧光合作用进化奥秘的有用模式生物。综合考虑系统发育和表型特征,我们提出了詹纳斯氏菌属中的一个新种,命名为 Pagriella pagri sp. nov. 。该新种的模式菌株为 AI_62(=DSM 115720=NBRC 115938)。

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