Tang Biao, Zhao Haoyu, Li Jie, Liu Na, Huang Yuting, Wang Juan, Yue Min
School of Life Science, Hangzhou Institute for Advanced Study, University of Chinese Academy of Sciences, Hangzhou, 310024, China.
State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-Products & Institute of Agro-product Safety and Nutrition, Zhejiang Academy of Agricultural Sciences, Hangzhou, 310021, China.
Heliyon. 2024 Apr 15;10(8):e29702. doi: 10.1016/j.heliyon.2024.e29702. eCollection 2024 Apr 30.
is an opportunistic and nosocomial pathogen found in the intensive care unit (ICU), but its antimicrobial resistance (AMR) is rarely addressed. Here, we reported two -positive strains, SMBC31 and SMBC50, recovered from the ICU of a hospital in Zhengzhou, China. The minimum inhibitory concentration (MIC) was determined using the broth microdilution method, while S1-PFGE was employed to demonstrate plasmid size approximation. Complete genome sequences were obtained through Illumina NovaSeq 6000 and Oxford Nanopore Technologies. Both strains exhibit resistance to meropenem and harbor the and resistance genes. The plasmid pSMBC31-39K in strain SMBC31 and pSMBC50-107K in strain SMBC50 were identified as carrying the gene. Notably, both of these plasmids were successfully transferred to strain J53. Phylogenetic analysis based on plasmid sequences revealed that pSMBC31-39K exhibited high homology with plasmids found in , sp., and , while pSMBC50-107K showed significant similarity to those of and . Notably, the coexistence of and was observed in all 94 KPC-2-producing strains by mining all genomes available under the GenBank database, which were mainly isolated from hospitalized patients. The emergence of multidrug-resistant poses significant challenges in treating clinical infections, highlighting the need for increased surveillance of this pathogen.
是一种在重症监护病房(ICU)中发现的机会性医院病原体,但其抗菌药物耐药性(AMR)很少被提及。在此,我们报告了从中国郑州一家医院的ICU中分离出的两株阳性菌株SMBC31和SMBC50。使用肉汤微量稀释法测定最低抑菌浓度(MIC),同时采用S1-PFGE来证明质粒大小近似值。通过Illumina NovaSeq 6000和牛津纳米孔技术获得完整的基因组序列。两株菌株均对美罗培南耐药,并携带 和 耐药基因。菌株SMBC31中的质粒pSMBC31-39K和菌株SMBC50中的pSMBC50-107K被鉴定为携带 基因。值得注意的是,这两种质粒都成功转移到了 菌株J53。基于质粒序列的系统发育分析表明,pSMBC31-39K与在 、 属和 中发现的质粒具有高度同源性,而pSMBC50-107K与 和 的质粒具有显著相似性。值得注意的是,通过挖掘GenBank数据库中所有可用的基因组,在所有94株产KPC-2的 菌株中均观察到 和 的共存,这些菌株主要从住院患者中分离得到。多重耐药 的出现给临床感染治疗带来了重大挑战,凸显了加强对该病原体监测的必要性。