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赖氨酸乙酰化和琥珀酰化的蛋白质组学分析,以研究强毒株丁香假单胞菌番茄致病变种DC3000和无毒株丁香假单胞菌番茄致病变种DC3000的致病性

Proteomic Analysis of Lysine Acetylation and Succinylation to Investigate the Pathogenicity of Virulent pv. DC3000 and Avirulent Line pv. DC3000 on .

作者信息

Ding Yongqiang, Liu Yangxuan, Yang Kexin, Zhao Yiran, Wen Chun, Yang Yi, Zhang Wei

机构信息

Key Laboratory of Bio-Resources and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu 610065, China.

National Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai 200032, China.

出版信息

Genes (Basel). 2024 Apr 16;15(4):499. doi: 10.3390/genes15040499.

Abstract

pv. DC3000 ( DC3000) is able to infect many economically important crops and thus causes substantial losses in the global agricultural economy. DC3000 can be divided into virulent lines and avirulent lines. For instance, the pathogen effector avrRPM1 of avirulent line ( DC3000 ) can be recognized and detoxified by the plant. To further compare the pathogenicity mechanisms of virulent and avirulent DC3000, a comprehensive analysis of the acetylome and succinylome in was conducted following infection with virulent line DC3000 and avirulent line . In this study, a total of 1625 acetylated proteins encompassing 3423 distinct acetylation sites were successfully identified. Additionally, 229 succinylated proteins with 527 unique succinylation sites were detected. A comparison of these modification profiles between plants infected with DC3000 and revealed significant differences. Specifically, modification sites demonstrated inconsistencies, with a variance of up to 10% compared to the control group. Moreover, lysine acetylation (Kac) and lysine succinylation (Ksu) displayed distinct preferences in their modification patterns. Lysine acetylation is observed to exhibit a tendency towards up-regulation in infected with . Conversely, the disparity in the number of Ksu up-regulated and down-regulated sites was not as pronounced. Motif enrichment analysis disclosed that acetylation modification sequences are relatively conserved, and regions rich in polar acidic/basic and non-polar hydrophobic amino acids are hotspots for acetylation modifications. Functional enrichment analysis indicated that the differentially modified proteins are primarily enriched in the photosynthesis pathway, particularly in relation to light-capturing proteins. In conclusion, this study provides an insightful profile of the lysine acetylome and succinylome in infected with virulent and avirulent lines of DC3000. Our findings revealed the potential impact of these post-translational modifications (PTMs) on the physiological functions of the host plant during pathogen infection. This study offers valuable insights into the complex interactions between plant pathogens and their hosts, laying the groundwork for future research on disease resistance and pathogenesis mechanisms.

摘要

丁香假单胞菌番茄致病变种DC3000(DC3000)能够感染许多具有重要经济价值的作物,从而给全球农业经济造成重大损失。DC3000可分为致病型菌株和无毒型菌株。例如,无毒型菌株(DC3000)的病原菌效应蛋白avrRPM1可被植物识别并解毒。为了进一步比较致病型和无毒型DC3000的致病机制,在用致病型菌株DC3000和无毒型菌株感染后,对(植物名称未给出,原文有误)的乙酰化蛋白质组和琥珀酰化蛋白质组进行了全面分析。在本研究中,成功鉴定出总共1625个乙酰化蛋白,包含3423个不同的乙酰化位点。此外,还检测到229个具有527个独特琥珀酰化位点的琥珀酰化蛋白。对感染DC3000和(植物名称未给出,原文有误)的植物之间的这些修饰谱进行比较,发现存在显著差异。具体而言,修饰位点表现出不一致性,与对照组相比差异高达10%。此外,赖氨酸乙酰化(Kac)和赖氨酸琥珀酰化(Ksu)在其修饰模式上表现出明显的偏好。观察到在感染(植物名称未给出,原文有误)的(植物名称未给出,原文有误)中赖氨酸乙酰化有上调趋势。相反,Ksu上调和下调位点数量的差异没有那么明显。基序富集分析表明,乙酰化修饰序列相对保守,富含极性酸性/碱性和非极性疏水氨基酸的区域是乙酰化修饰的热点。功能富集分析表明,差异修饰的蛋白质主要富集在光合作用途径中,特别是与光捕获蛋白有关。总之,本研究提供了感染致病型和无毒型DC3000的(植物名称未给出,原文有误)中赖氨酸乙酰化蛋白质组和琥珀酰化蛋白质组的深刻概况。我们的研究结果揭示了这些翻译后修饰(PTMs)在病原体感染期间对宿主植物生理功能的潜在影响。本研究为植物病原体与其宿主之间的复杂相互作用提供了有价值的见解,为未来抗病性和致病机制的研究奠定了基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0e47/11050401/7861d1448041/genes-15-00499-g001.jpg

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