Hainan Institute, Zhejiang University, Sanya, Hainan 572000, China; Zhejiang Provincial Key Laboratory of Crop Genetic Resources, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, Zhejiang 310058, China.
National Key Laboratory for Rice Biology, Institute of Biotechnology, Zhejiang University, Hangzhou 310058, China.
Plant Commun. 2024 Jul 8;5(7):100927. doi: 10.1016/j.xplc.2024.100927. Epub 2024 Apr 27.
Long non-coding RNAs (lncRNAs) have emerged as integral gene-expression regulators underlying plant growth, development, and adaptation. To adapt to the heterogeneous and dynamic rhizosphere, plants use interconnected regulatory mechanisms to optimally fine-tune gene-expression-governing interactions with soil biota, as well as nutrient acquisition and heavy metal tolerance. Recently, high-throughput sequencing has enabled the identification of plant lncRNAs responsive to rhizosphere biotic and abiotic cues. Here, we examine lncRNA biogenesis, classification, and mode of action, highlighting the functions of lncRNAs in mediating plant adaptation to diverse rhizosphere factors. We then discuss studies that reveal the significance and target genes of lncRNAs during developmental plasticity and stress responses at the rhizobium interface. A comprehensive understanding of specific lncRNAs, their regulatory targets, and the intricacies of their functional interaction networks will provide crucial insights into how these transcriptomic switches fine-tune responses to shifting rhizosphere signals. Looking ahead, we foresee that single-cell dissection of cell-type-specific lncRNA regulatory dynamics will enhance our understanding of the precise developmental modulation mechanisms that enable plant rhizosphere adaptation. Overcoming future challenges through multi-omics and genetic approaches will more fully reveal the integral roles of lncRNAs in governing plant adaptation to the belowground environment.
长非编码 RNA(lncRNAs)已成为植物生长、发育和适应的重要基因表达调控因子。为了适应异质和动态的根际环境,植物利用相互关联的调控机制,优化与土壤生物群、养分获取和重金属耐受相关的基因表达调控相互作用。最近,高通量测序技术使鉴定对根际生物和非生物线索有反应的植物 lncRNAs 成为可能。在这里,我们研究了 lncRNA 的生物发生、分类和作用模式,强调了 lncRNAs 在介导植物适应多样化根际因子中的功能。然后,我们讨论了揭示 lncRNAs 在根瘤菌界面发育可塑性和应激反应中的重要性和靶基因的研究。全面了解特定的 lncRNAs、它们的调控靶基因以及它们功能相互作用网络的复杂性,将为这些转录组开关如何微调对不断变化的根际信号的反应提供重要的见解。展望未来,我们预计对细胞类型特异性 lncRNA 调控动态的单细胞剖析将增强我们对使植物适应根际环境的精确发育调节机制的理解。通过多组学和遗传方法克服未来的挑战,将更充分地揭示 lncRNAs 在植物适应地下环境中的整体作用。