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由核糖体RNA折叠而成的分子折纸。

Folding molecular origami from ribosomal RNA.

作者信息

Shapiro Anastasia, Joseph Noah, Mellul Nadav, Abu-Horowitz Almogit, Mizrahi Boaz, Bachelet Ido

机构信息

Augmanity Nano Ltd., 8 Hamada St., 7670308, Rehovot, Israel.

Technion, Faculty of Biotechnology and Food Engineering, 32000, Haifa, Israel.

出版信息

J Nanobiotechnology. 2024 May 2;22(1):218. doi: 10.1186/s12951-024-02489-2.

Abstract

Approximately 80 percent of the total RNA in cells is ribosomal RNA (rRNA), making it an abundant and inexpensive natural source of long, single-stranded nucleic acid, which could be used as raw material for the fabrication of molecular origami. In this study, we demonstrate efficient and robust construction of 2D and 3D origami nanostructures utilizing cellular rRNA as a scaffold and DNA oligonucleotide staples. We present calibrated protocols for the robust folding of contiguous shapes from one or two rRNA subunits that are efficient to allow folding using crude extracts of total RNA. We also show that RNA maintains stability within the folded structure. Lastly, we present a novel and comprehensive analysis and insights into the stability of RNA:DNA origami nanostructures and demonstrate their enhanced stability when coated with polylysine-polyethylene glycol in different temperatures, low Mg concentrations, human serum, and in the presence of nucleases (DNase I or RNase H). Thus, laying the foundation for their potential implementation in emerging biomedical applications, where folding rRNA into stable structures outside and inside cells would be desired.

摘要

细胞中约80%的总RNA是核糖体RNA(rRNA),这使其成为一种丰富且廉价的长链单链核酸天然来源,可作为制造分子折纸的原材料。在本研究中,我们展示了利用细胞rRNA作为支架和DNA寡核苷酸钉来高效且稳健地构建二维和三维折纸纳米结构。我们提出了校准方案,用于从一个或两个rRNA亚基稳健折叠连续形状,这些方案有效地允许使用总RNA粗提物进行折叠。我们还表明RNA在折叠结构内保持稳定性。最后,我们对RNA:DNA折纸纳米结构的稳定性进行了新颖而全面的分析并给出见解,并证明它们在不同温度、低镁浓度、人血清以及存在核酸酶(DNase I或RNase H)的情况下用聚赖氨酸-聚乙二醇包被时稳定性增强。因此,为它们在新兴生物医学应用中的潜在应用奠定了基础,在这些应用中,将rRNA折叠成细胞内外的稳定结构是理想的。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3c64/11067225/7b9adc3a3f06/12951_2024_2489_Fig1_HTML.jpg

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