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通过泛癌计算机筛选揭示 HOXB7 作为一种新型诊断和预后生物标志物。

Unveiling HOXB7 as a novel diagnostic and prognostic biomarker through pan-cancer computer screening.

机构信息

Division of Pulmonary Medicine, The First Affiliated Hospital of Wenzhou Medical University, Wenzhou Key Laboratory of Interdiscipline and Translational Medicine, Wenzhou Key Laboratory of Heart and Lung, Wenzhou, Zhejiang, 325000, China.

Department of Cardiology, First School of Clinical Medicine College, Yangtze University, Jingzhou, 434000, China.

出版信息

Comput Biol Med. 2024 Jun;176:108562. doi: 10.1016/j.compbiomed.2024.108562. Epub 2024 May 7.

DOI:10.1016/j.compbiomed.2024.108562
PMID:38728993
Abstract

We attempted to investigate the role of HOXB7 in tumor progression and evolution by means of an extensive computer screening analysis of various cancer types. We performed univariate Cox regression and Kaplan-Meier survival analyses to assess the impact of HOXB7 on overall survival (OS), disease-specific survival (DSS), and progression-free interval (PFI) in different types of cancer. Furthermore, we examined the relationship between HOXB7 and several clinical features: tumor microenvironment, immune regulatory genes, immune checkpoints, tumor mutational burden (TMB), and microsatellite instability (MSI). We performed gene set enrichment analysis to gain deeper insights into the potential molecular mechanisms of HOXB7, and validated our findings through functional assays in cells, including methyl thiazolyl tetrazolium cytotoxicity and Transwell invasion assays. HOXB7 expression was associated with different clinical characteristics in numerous malignancies. Higher HOXB7 expression was associated with worse OS, DSS, and PFI in some cancer types. In particular, HOXB7 expression was favorably associated with immune cell infiltration, immune regulatory genes, immunological checkpoints, TMB, and MSI in malignancies. Furthermore, we identified a strong link between copper death-associated gene expression and HOXB7 expression. According to the findings of this study, HOXB7 might serve as an appealing focus for tumor diagnosis and immunotherapy and a prospective indicator of prognosis.

摘要

我们试图通过对各种癌症类型进行广泛的计算机筛选分析,来研究 HOXB7 在肿瘤进展和演化中的作用。我们进行了单变量 Cox 回归和 Kaplan-Meier 生存分析,以评估 HOXB7 对不同类型癌症的总生存期 (OS)、疾病特异性生存期 (DSS) 和无进展生存期 (PFI) 的影响。此外,我们还研究了 HOXB7 与几种临床特征之间的关系:肿瘤微环境、免疫调节基因、免疫检查点、肿瘤突变负担 (TMB) 和微卫星不稳定性 (MSI)。我们进行了基因集富集分析,以更深入地了解 HOXB7 的潜在分子机制,并通过细胞中的功能测定验证了我们的发现,包括甲基噻唑基四唑细胞毒性和 Transwell 侵袭测定。HOXB7 的表达与多种恶性肿瘤的不同临床特征有关。在某些癌症类型中,HOXB7 表达较高与 OS、DSS 和 PFI 较差相关。特别是,HOXB7 表达与恶性肿瘤中的免疫细胞浸润、免疫调节基因、免疫检查点、TMB 和 MSI 呈正相关。此外,我们还发现铜死亡相关基因表达与 HOXB7 表达之间存在很强的联系。根据本研究的结果,HOXB7 可能成为肿瘤诊断和免疫治疗的一个有吸引力的焦点,也是预后的一个有前途的指标。

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