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纳入免疫检查点基因的预后模型预测肺腺癌免疫治疗疗效:一项整合机器学习算法的队列研究。

Prognostic model incorporating immune checkpoint genes to predict the immunotherapy efficacy for lung adenocarcinoma: a cohort study integrating machine learning algorithms.

机构信息

Department of Radiation Oncology, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing, People's Republic of China.

Department of Radiation Oncology, State Key Laboratory of Complex Severe and Rare Diseases, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing, People's Republic of China.

出版信息

Immunol Res. 2024 Aug;72(4):851-863. doi: 10.1007/s12026-024-09492-7. Epub 2024 May 16.

Abstract

This study aimed to develop and validate a nomogram based on immune checkpoint genes (ICGs) for predicting prognosis and immune checkpoint blockade (ICB) efficacy in lung adenocarcinoma (LUAD) patients. A total of 385 LUAD patients from the TCGA database and 269 LUAD patients in the combined dataset (GSE41272 + GSE50081) were divided into training and validation cohorts, respectively. Three different machine learning algorithms including random forest (RF), least absolute shrinkage and selection operator (LASSO) logistic regression analysis, and support vector machine (SVM) were employed to select the predictive markers from 82 ICGs to construct the prognostic nomogram. The X-tile software was used to stratify patients into high- and low-risk subgroups based on the nomogram-derived risk scores. Differences in functional enrichment and immune infiltration between the two subgroups were assessed using gene set variation analysis (GSVA) and various algorithms. Additionally, three lung cancer cohorts receiving ICB therapy were utilized to evaluate the ability of the model to predict ICB efficacy in the real world. Five ICGs were identified as predictive markers across all three machine learning algorithms, leading to the construction of a nomogram with strong potential for prognosis prediction in both the training and validation cohorts (all AUC values close to 0.800). The patients were divided into high- (risk score ≥ 185.0) and low-risk subgroups (risk score < 185.0). Compared to the high-risk subgroup, the low-risk subgroup exhibited enrichment in immune activation pathways and increased infiltration of activated immune cells, such as CD8 + T cells and M1 macrophages (P < 0.05). Furthermore, the low-risk subgroup had a greater likelihood of benefiting from ICB therapy and longer progression-free survival (PFS) than did the high-risk subgroup (P < 0.05) in the two cohorts receiving ICB therapy. A nomogram based on ICGs was constructed and validated to aid in predicting prognosis and ICB treatment efficacy in LUAD patients.

摘要

这项研究旨在开发和验证一种基于免疫检查点基因(ICGs)的列线图,用于预测肺腺癌(LUAD)患者的预后和免疫检查点阻断(ICB)疗效。总共 385 名来自 TCGA 数据库的 LUAD 患者和 269 名来自联合数据集(GSE41272+GSE50081)的 LUAD 患者分别被分为训练和验证队列。三种不同的机器学习算法,包括随机森林(RF)、最小绝对收缩和选择算子(LASSO)逻辑回归分析和支持向量机(SVM),用于从 82 个 ICG 中选择预测标志物,构建预后列线图。X-tile 软件用于根据列线图得出的风险评分将患者分层为高风险和低风险亚组。使用基因集变异分析(GSVA)和各种算法评估两个亚组之间的功能富集和免疫浸润差异。此外,还利用三个接受 ICB 治疗的肺癌队列评估模型在真实世界中预测 ICB 疗效的能力。在所有三种机器学习算法中,都确定了五个 ICG 作为预测标志物,从而构建了一个在训练和验证队列中都具有很强预后预测潜力的列线图(所有 AUC 值接近 0.800)。患者被分为高风险(风险评分≥185.0)和低风险亚组(风险评分<185.0)。与高风险亚组相比,低风险亚组在免疫激活途径中富集,并且浸润了更多的激活免疫细胞,如 CD8+T 细胞和 M1 巨噬细胞(P<0.05)。此外,与高风险亚组相比,在接受 ICB 治疗的两个队列中,低风险亚组更有可能从 ICB 治疗中获益,并具有更长的无进展生存期(PFS)(P<0.05)。构建并验证了一种基于 ICG 的列线图,以帮助预测 LUAD 患者的预后和 ICB 治疗疗效。

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