Ameer Aqsa, Saleem Farrukh, Keating Ciara, Gundogdu Ozan, Ijaz Umer Zeeshan, Javed Sundus
Department of Biosciences, COMSATS University Islamabad, Pakistan.
Water & Environment Research Group, University of Glasgow, Mazumdar-Shaw Advanced Research Centre, Glasgow, UK.
Data Brief. 2024 May 1;54:110487. doi: 10.1016/j.dib.2024.110487. eCollection 2024 Jun.
This article presents metagenomic-assembled genomes (MAGs) of prokaryotic organisms originating from chicken caeca. The samples originate from broiler chickens, one group was infected with Newcastle Disease Virus (NDV) and one uninfected control group. There were four birds per group. Both groups were raised on commercially available antibiotic free feed under a semi-controlled setup. The binning step of the samples identified 130 MAGs with ≥50 % completion, and ≤10 % contamination. The data presented includes sequences in FASTA format, tables of functional annotation of genes, and data from two different approaches for phylogenetic tree construction using these MAGs. Major geochemical cycles at community level including carbon, sulfur, and nitrogen cycles are also presented.
本文展示了源自鸡盲肠的原核生物的宏基因组组装基因组（MAG）。样本来自肉鸡，一组感染了新城疫病毒（NDV），另一组为未感染的对照组。每组有四只鸡。两组均在半控制环境下以市售无抗生素饲料饲养。样本的分箱步骤鉴定出130个完成度≥50%且污染率≤10%的MAG。呈现的数据包括FASTA格式的序列、基因功能注释表，以及使用这些MAG构建系统发育树的两种不同方法的数据。还展示了群落水平上的主要地球化学循环，包括碳、硫和氮循环。
