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Glycobiology. 2024 May 26;34(7). doi: 10.1093/glycob/cwae037.
Interactions between proteins and glycans are critical to various biological processes. With databases of carbohydrate-interacting proteins and increasing amounts of structural data, the three-sided right-handed β-helix (RHBH) has emerged as a significant structural fold for glycan interactions. In this review, we provide an overview of the sequence, mechanistic, and structural features that enable the RHBH to interact with glycans. The RHBH is a prevalent fold that exists in eukaryotes, prokaryotes, and viruses associated with adhesin and carbohydrate-active enzyme (CAZyme) functions. An evolutionary trajectory analysis on structurally characterized RHBH-containing proteins shows that they likely evolved from carbohydrate-binding proteins with their carbohydrate-degrading activities evolving later. By examining three polysaccharide lyase and three glycoside hydrolase structures, we provide a detailed view of the modes of glycan binding in RHBH proteins. The 3-dimensional shape of the RHBH creates an electrostatically and spatially favorable glycan binding surface that allows for extensive hydrogen bonding interactions, leading to favorable and stable glycan binding. The RHBH is observed to be an adaptable domain capable of being modified with loop insertions and charge inversions to accommodate heterogeneous and flexible glycans and diverse reaction mechanisms. Understanding this prevalent protein fold can advance our knowledge of glycan binding in biological systems and help guide the efficient design and utilization of RHBH-containing proteins in glycobiology research.
蛋白质与糖之间的相互作用对于各种生物过程至关重要。随着碳水化合物相互作用蛋白数据库和越来越多的结构数据的出现,三叶草型右手β-螺旋(RHBH)已成为糖相互作用的重要结构折叠。在这篇综述中,我们概述了使 RHBH 能够与糖相互作用的序列、机制和结构特征。RHBH 是一种普遍存在的折叠结构,存在于真核生物、原核生物和与黏附素和糖基水解酶(CAZyme)功能相关的病毒中。对结构特征明确的含有 RHBH 的蛋白质进行进化轨迹分析表明,它们可能是从具有碳水化合物降解活性的碳水化合物结合蛋白进化而来的。通过检查三个多糖裂解酶和三个糖苷水解酶的结构,我们提供了 RHBH 蛋白中糖结合模式的详细视图。RHBH 的三维形状创造了一个静电和空间有利的糖结合表面,允许广泛的氢键相互作用,从而导致有利和稳定的糖结合。观察到 RHBH 是一个适应性的结构域,能够通过环插入和电荷反转进行修饰,以适应异构和灵活的糖,并具有多样化的反应机制。了解这种普遍存在的蛋白质折叠可以增进我们对生物系统中糖结合的认识,并有助于指导在糖生物学研究中对含有 RHBH 的蛋白质进行高效设计和利用。