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死亡相关蛋白激酶 1 可预测多种癌症的预后和免疫治疗反应。

Death associated protein kinase 1 predicts the prognosis and the immunotherapy response of various cancers.

机构信息

Department of Thoracic Surgery, Renmin Hospital of Wuhan University, Wuhan, 430060, Hubei Province, China.

Department of Anesthesia, Xiangyang No.1 People's Hospital, Hubei University of Medicine, Xiangyang, 441000, Hubei Province, China.

出版信息

Mol Biol Rep. 2024 May 24;51(1):670. doi: 10.1007/s11033-024-09240-y.

Abstract

BACKGROUND

Death Associated Protein Kinase 1 (DAPK1) is a calcium/calmodulin-dependent serine/threonine kinase, which has been reported to be a tumor suppressor with unbalanced expression in various tissues. However, its function in tumor immunotherapy is still unclear.

METHODS

The online GEPIA2 database was used to support TCGA results. We explored the DAPK1 pan-cancer genomic alteration analysis using the cBioPortal web tool. The Human Protein Atlas (HPA) was employed to mine DAPK1 protein information. We verified the expression of DAPK1 in lung adenocarcinoma samples using RT-qPCR. Subsequently, the relationship between the expression of DAPK1 and the clinical stage was analyzed. We used TIMER2.0 as the primary platform for studying DAPK1-related immune cell infiltration. Associations between DAPK1 and immunotherapy biomarkers were analyzed using Spearman correlation analysis. TMB and MSI expression was also examined. Finally, we used Kaplan-Meier Plots to evaluate the relationship between DAPK1 expression and the efficacy of immunotherapy.

RESULTS

DAPK1 is aberrantly expressed in most cancer types and has prognostic power in various cancers. Gene mutation was the most common DAPK1 alteration across pan-cancers. The DAPK1 protein was mainly localized to tumor cell centrosomes. DAPK1 was also significantly associated with immune-activated hallmarks, immune cell infiltration, and the expression of immunomodulators. Notably, DAPK1 can also significantly predict responses to anti-PD1 and anti-CTLA-4 therapy in cancer patients.

CONCLUSIONS

Our findings suggest that DAPK1 may not only be an effective prognostic factor in cancer patients but may also function as a promising predictive immunotherapy biomarker for cancer patients treated with immune checkpoint inhibitors.

摘要

背景

死亡相关蛋白激酶 1(DAPK1)是一种钙/钙调蛋白依赖性丝氨酸/苏氨酸激酶,已有报道称其在各种组织中表达失衡,是一种肿瘤抑制因子。然而,其在肿瘤免疫治疗中的作用尚不清楚。

方法

使用在线 GEPIA2 数据库支持 TCGA 结果。我们使用 cBioPortal 网络工具探索了 DAPK1 泛癌基因组改变分析。人类蛋白质图谱(HPA)用于挖掘 DAPK1 蛋白信息。我们使用 RT-qPCR 验证了肺腺癌样本中 DAPK1 的表达。随后,分析了 DAPK1 表达与临床分期的关系。我们使用 TIMER2.0 作为研究 DAPK1 相关免疫细胞浸润的主要平台。使用 Spearman 相关性分析分析了 DAPK1 与免疫治疗生物标志物之间的关系。还检查了 TMB 和 MSI 的表达。最后,我们使用 Kaplan-Meier 图评估了 DAPK1 表达与免疫治疗疗效之间的关系。

结果

DAPK1 在大多数癌症类型中表达异常,并且在各种癌症中具有预后能力。基因突变是跨癌症最常见的 DAPK1 改变。DAPK1 蛋白主要定位于肿瘤细胞中心体。DAPK1 还与免疫激活特征、免疫细胞浸润和免疫调节剂的表达显著相关。值得注意的是,DAPK1 还可以显著预测癌症患者对抗 PD1 和抗 CTLA-4 治疗的反应。

结论

我们的研究结果表明,DAPK1 不仅可能是癌症患者的有效预后因素,而且可能是癌症患者接受免疫检查点抑制剂治疗的有前途的预测性免疫治疗生物标志物。

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