School of Food and Biological Engineering, Jiangsu University, 301 Xuefu Road, Jingkou, Zhenjiang, 212013, People's Republic of China.
Curr Microbiol. 2024 May 28;81(7):194. doi: 10.1007/s00284-024-03746-1.
Four halophilic archaeal strains, BCD28, BND7, PSR21, and PSRA2, were isolated from coastal and inland saline soil, respectively. The 16S rRNA and rpoB' gene sequence similarities among these four strains and current species of Halomarina were 95.9-96.6% and 86.9-90.3%, respectively. Phylogenetic and phylogenomic analyses revealed that these four strains tightly cluster with the current species of the genus Halomarina. The AAI, ANI, and dDDH values among these four strains and current species of Halomarina were 65.3-68.4%, 75.8-77.7%, and 20.3-22.0%, respectively, clearly below the threshold values for species demarcation. Strains BCD28, BND7, PSR21, and PSRA2 could be differentiated from the current species of Halomarina based on the comparison of diverse phenotypic characteristics. The major polar lipids of these four strains were phosphatidylglycerol (PG), phosphatidylglycerol phosphate methyl ester (PGP-Me), and four to five glycolipids. Phosphatidylglycerol sulfate (PGS) was only detected in strain BND7. The phenotypic, phylogenetic, and genome-based analyses suggested that strains BCD28 (= CGMCC 1.18776 = JCM 34908), BND7 (= CGMCC 1.18778 = JCM 34910), PSR21 (= CGMCC 1.17027 = JCM 34147), and PSRA2 (= CGMCC 1.17214 = JCM 34148) represent four novel species of the genus Halomarina, for which the names Halomarina litorea sp. nov., Halomarina pelagica sp. nov., Halomarina halobia sp. nov., and Halomarina ordinaria sp. nov. are proposed.
从沿海和内陆盐碱土中分别分离到 4 株嗜盐古菌 BCD28、BND7、PSR21 和 PSRA2。这 4 株菌的 16S rRNA 和 rpoB'基因序列与当前的 Halomarina 种之间的相似度分别为 95.9-96.6%和 86.9-90.3%。系统发育和系统基因组分析表明,这 4 株菌与当前的 Halomarina 种紧密聚类。这 4 株菌与当前的 Halomarina 种之间的 AAI、ANI 和 dDDH 值分别为 65.3-68.4%、75.8-77.7%和 20.3-22.0%,明显低于种间区分的阈值。基于多种表型特征的比较,可将菌株 BCD28、BND7、PSR21 和 PSRA2 与当前的 Halomarina 种区分开来。这 4 株菌的主要极性脂为磷脂酰甘油(PG)、磷脂酰甘油磷酸甲基酯(PGP-Me)和四到五种糖脂。只有菌株 BND7 检测到磷脂酰甘油硫酸盐(PGS)。表型、系统发育和基因组分析表明,菌株 BCD28(=CGMCC 1.18776=JCM 34908)、BND7(=CGMCC 1.18778=JCM 34910)、PSR21(=CGMCC 1.17027=JCM 34147)和 PSRA2(=CGMCC 1.17214=JCM 34148)代表 Halomarina 属的四个新种,分别命名为 Halomarina litorea sp. nov.、Halomarina pelagica sp. nov.、Halomarina halobia sp. nov.和 Halomarina ordinaria sp. nov.。