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新种,从. 的根际土壤中分离得到。

sp. nov., isolated from the rhizosphere soil of .

机构信息

School of Life and Health Sciences, Hunan University of Science and technology, Xiangtan 411201, PR China.

Key Laboratory of Ecological Remediation and Safe Utilization of Heavy Metal-Polluted Soils, College of Hunan Province, Xiangtan 411201, PR China.

出版信息

Int J Syst Evol Microbiol. 2024 Apr;74(4). doi: 10.1099/ijsem.0.006332.

Abstract

A novel actinobacterium, strain HUAS 3, was isolated from the rhizosphere soil of collected in Hunan Province, PR China. Strain HUAS 3 contained -diaminopimelic acid in the cell-wall peptidoglycan. The dominant menaquinones were MK-9(H), MK-9(H), MK-10(H) and MK-9(H). The polar lipids consisted of diphosphatidylglycerol, phospholipids, phosphatidylethanolamine, phosphatidylglycerol, phosphotidylinositol and phosphatidylinositol mannosides. The main cellular fatty acids (>5.0 %) were C ω8, iso-C, C ω9, iso-C, C and summed feature 3 (C ω6 and/or C ω7). The DNA G+C content of the novel strain's genome sequence, consisting of 7 196 442 bp, was 72.8 mol%. The full-length 16S rRNA gene sequence analysis indicated that strain HUAS 3 belonged to the genus and showed highest similarities to A38 (99.44 %), DSM 43816 (99.23 %), DSM 45142 (99.23 %), PPF5-17 (99.16 %) and DSM 44398 (98.96 %). Phylogenetic trees based on 16S rRNA gene sequences showed that strain HUAS 3 was closely related to A38, DSM 45142 and PPF5-17. The phylogenomic tree revealed that strain HUAS 3 was closely related to DSM 43817. However, the average nucleotide identity (ANIb/ANIm) and the digital DNA-DNA hybridization values between them were 84.75 /88.16 and 30.80 %, respectively, far less than the 95-96 and 70 % cut-off points recommended for delineating species. Furthermore, strain HUAS 3 was distinct from the type strain of in terms of phenotypic and chemotaxonomic characteristics. In summary, strain HUAS 3 represents a novel species, for which the name sp. nov. is proposed. The type strain is HUAS 3 (=MCCC 1K08599=JCM 36275).

摘要

一株新的放线菌菌株 HUAS 3 从中国湖南省采集的根际土壤中分离得到。HUAS 3 菌株的细胞壁肽聚糖含有 -二氨基庚二酸。主要的类异戊二烯醌为 MK-9(H)、MK-9(H)、MK-10(H)和 MK-9(H)。极性脂由双磷脂酰甘油、磷脂、磷脂酰乙醇胺、磷脂酰甘油、磷酸肌醇和磷酸肌醇甘露糖苷组成。主要的细胞脂肪酸 (>5.0%)为 C18:0、iso-C15:0、C19:0、iso-C17:0、C16:0 和特征脂肪酸 3 (C16:0 和/或 C17:0)。新菌株基因组序列的 DNA G+C 含量为 72.8mol%,由 7196442bp 组成。全长 16S rRNA 基因序列分析表明,菌株 HUAS 3 属于 属,与 A38(99.44%)、DSM 43816(99.23%)、DSM 45142(99.23%)、PPF5-17(99.16%)和 DSM 44398(98.96%)最为相似。基于 16S rRNA 基因序列的系统发育树表明,菌株 HUAS 3 与 A38、DSM 45142 和 PPF5-17 密切相关。系统基因组树显示,菌株 HUAS 3 与 DSM 43817 密切相关。然而,它们之间的平均核苷酸身份(ANIb/ANIm)和数字 DNA-DNA 杂交值分别为 84.75%/88.16%和 30.80%,远低于 95-96%和 70%的分类物种界限值。此外,菌株 HUAS 3 在表型和化学分类特征上与 属的模式菌株不同。综上所述,菌株 HUAS 3 代表一个新的 种,建议命名为 sp. nov.。模式菌株为 HUAS 3(=MCCC 1K08599=JCM 36275)。

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