Simeral Mathieu L, Demers Steven M E, Sheth Kyle, Hafner Jason H
Department of Physics and Astronomy Rice University Houston Texas USA.
Department of Chemistry Rice University Houston Texas USA.
Anal Sci Adv. 2023 Dec 4;5(1-2):2300057. doi: 10.1002/ansa.202300057. eCollection 2024 Feb.
Raman spectroscopy provides label-free, specific analysis of biomolecular structure and interactions. It could have a greater impact with improved characterization of complex fingerprint vibrations. Many Raman peaks have been assigned to cholesterol, for example, but the molecular vibrations associated with those peaks are not known. In this report, time-dependent density functional theory calculations of the Raman spectrum of cholesterol are compared to measurements on microcrystalline powder to identify 23 peaks in the Raman spectrum. Among them, a band of six peaks is found to be sensitive to the conformational structure of cholesterol's iso-octyl chain. Calculations on 10 conformers in this spectral band are fit to experimental spectra to probe the cholesterol chain structure in purified powder and in phospholipid vesicles. In vesicles, the chain is found to bend perpendicular to the steroid rings, supporting the case that the chain is a dynamic structure that contributes to lipid condensation and other effects of cholesterol in biomembranes. : Here we use density functional theory to identify a band of six peaks in cholesterol's Raman spectrum that is sensitive to the conformational structure of cholesterol's chain. Raman spectra were analyzed to show that in fluid-phase lipid membranes, about half of the cholesterol chains point perpendicular to the steroid rings. This new method of label-free structural analysis could make significant contributions to our understanding of cholesterol's critical role in biomembrane structure and function. More broadly, the results show that computational quantum chemistry Raman spectroscopy can make significant new contributions to molecular structure when spectra are interpreted with computational quantum chemistry.
拉曼光谱法可对生物分子结构和相互作用进行无标记的特异性分析。通过改进对复杂指纹振动的表征,它可能会产生更大的影响。例如,许多拉曼峰已被归因于胆固醇,但与这些峰相关的分子振动尚不清楚。在本报告中,将胆固醇拉曼光谱的含时密度泛函理论计算结果与微晶粉末的测量结果进行比较,以识别拉曼光谱中的23个峰。其中,发现一组六个峰的谱带对胆固醇异辛基链的构象结构敏感。对该光谱带中的10种构象进行计算,并与实验光谱拟合,以探究纯化粉末和磷脂囊泡中胆固醇链的结构。在囊泡中,发现该链垂直于类固醇环弯曲,这支持了该链是一种动态结构的观点,该结构有助于脂质凝聚以及胆固醇在生物膜中的其他作用。:在这里,我们使用密度泛函理论来识别胆固醇拉曼光谱中一组对胆固醇链构象结构敏感的六个峰。拉曼光谱分析表明,在液相脂质膜中,约一半的胆固醇链垂直于类固醇环。这种新方法的无标记结构分析可为我们理解胆固醇在生物膜结构和功能中的关键作用做出重大贡献。更广泛地说,结果表明,当用计算量子化学解释光谱时,计算量子化学拉曼光谱法可为分子结构做出重大新贡献。