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万氏甲烷球菌含硒氢化酶的立体化学研究:手性标记的二氢-8-羟基-5-脱氮黄素辅因子C-5绝对构型的测定

Stereochemical studies of a selenium-containing hydrogenase from Methanococcus vannielii: determination of the absolute configuration of C-5 chirally labeled dihydro-8-hydroxy-5-deazaflavin cofactor.

作者信息

Yamazaki S, Tsai L, Stadtman T C, Teshima T, Nakaji A, Shiba T

出版信息

Proc Natl Acad Sci U S A. 1985 Mar;82(5):1364-6. doi: 10.1073/pnas.82.5.1364.

DOI:10.1073/pnas.82.5.1364
PMID:3883357
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC397261/
Abstract

Reduction of 7,8-didemethyl-8-hydroxy-[5-2H]-5-deazariboflavin by the selenium-containing hydrogenase from Methanococcus vannielii gave a C-5 chirally labeled 1,5-dihydro derivative. The absolute configuration of the chiral label was shown to be (R) by comparison of the chemically degraded product with authentic samples of known absolute configurations. Therefore, the steric course of the enzymic reactions involving the 8-hydroxy-5-deazaflavin cofactor can be defined as follows: (a) reduction occurs on the si face of the 5-deazaflavin molecule; (b) oxidation proceeds by the abstraction of the pro-S hydrogen at C-5 of the 1,5-dihydro-5-deazaflavin. Thus, the selenium-containing hydrogenase and 8-hydroxy-5-deazaflavin-dependent NADP+ reductase from M. vannielii are si face specific.

摘要

来自万氏甲烷球菌的含硒氢化酶对7,8-二去甲基-8-羟基-[5-²H]-5-去氮核黄素的还原反应生成了一种C-5手性标记的1,5-二氢衍生物。通过将化学降解产物与已知绝对构型的真实样品进行比较,表明手性标记的绝对构型为(R)。因此,涉及8-羟基-5-去氮核黄素辅因子的酶促反应的立体化学过程可定义如下:(a) 还原发生在5-去氮核黄素分子的si面上;(b) 氧化是通过脱去1,5-二氢-5-去氮核黄素C-5位的前-S氢进行的。因此,来自万氏甲烷球菌的含硒氢化酶和8-羟基-5-去氮核黄素依赖的NADP⁺还原酶具有si面特异性。

相似文献

1
Stereochemical studies of a selenium-containing hydrogenase from Methanococcus vannielii: determination of the absolute configuration of C-5 chirally labeled dihydro-8-hydroxy-5-deazaflavin cofactor.万氏甲烷球菌含硒氢化酶的立体化学研究:手性标记的二氢-8-羟基-5-脱氮黄素辅因子C-5绝对构型的测定
Proc Natl Acad Sci U S A. 1985 Mar;82(5):1364-6. doi: 10.1073/pnas.82.5.1364.
2
Stereochemical studies of 8-hydroxy-5-deazaflavin-dependent NADP+ reductase from Methanococcus vannielii.来自万氏甲烷球菌的8-羟基-5-脱氮黄素依赖的NADP⁺还原酶的立体化学研究。
J Biol Chem. 1980 Oct 10;255(19):9025-7.
3
Analogues of 8-hydroxy-5-deazaflavin cofactor: relative activity as substrates for 8-hydroxy-5-deazaflavin-dependent NADP+ reductase from Methanococcus vannielii.8-羟基-5-脱氮黄素辅因子类似物:作为嗜盐甲烷球菌8-羟基-5-脱氮黄素依赖的NADP+还原酶底物的相对活性。
Biochemistry. 1982 Mar 2;21(5):934-9. doi: 10.1021/bi00534a019.
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Purification and properties of 8-hydroxy-5-deazaflavin-dependent NADP+ reductase from Methanococcus vannielii.来自万氏甲烷球菌的8-羟基-5-脱氮黄素依赖的NADP⁺还原酶的纯化及性质
J Biol Chem. 1980 Jul 10;255(13):6462-5.
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Reconstitution of a formate-NADP+ oxidoreductase from formate dehydrogenase and a 5-deazaflavin-linked NADP+ reductase isolated from Methanococcus vannielii.由甲酸脱氢酶和从万氏甲烷球菌中分离出的5-脱氮黄素连接的NADP⁺还原酶重构甲酸-NADP⁺氧化还原酶。
J Biol Chem. 1980 Feb 10;255(3):1049-53.
6
A selenium-containing hydrogenase from Methanococcus vannielii. Identification of the selenium moiety as a selenocysteine residue.来自万氏甲烷球菌的一种含硒氢化酶。将硒部分鉴定为硒代半胱氨酸残基。
J Biol Chem. 1982 Jul 25;257(14):7926-9.
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Paramagnetic centers in the nickel-containing, deazaflavin-reducing hydrogenase from Methanobacterium thermoautotrophicum.来自嗜热自养甲烷杆菌的含镍、脱氮黄素还原氢化酶中的顺磁中心。
Proc Natl Acad Sci U S A. 1983 Jan;80(2):378-82. doi: 10.1073/pnas.80.2.378.
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Eur J Biochem. 1987 Dec 15;169(3):571-7. doi: 10.1111/j.1432-1033.1987.tb13647.x.
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Si-face stereospecificity at C5 of coenzyme F420 for F420-dependent glucose-6-phosphate dehydrogenase from Mycobacterium smegmatis and F420-dependent alcohol dehydrogenase from Methanoculleus thermophilicus.耻垢分枝杆菌中F420依赖性葡萄糖-6-磷酸脱氢酶以及嗜热甲烷袋菌中F420依赖性乙醇脱氢酶对辅酶F420的C5位的Si-面立体特异性。
Eur J Biochem. 1996 Jul 1;239(1):93-7. doi: 10.1111/j.1432-1033.1996.0093u.x.
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Selenium-dependent and selenium-independent formate dehydrogenases of Methanococcus vannielii. Separation of the two forms and characterization of the purified selenium-independent form.万氏甲烷球菌的硒依赖型和非硒依赖型甲酸脱氢酶。两种形式的分离及纯化的非硒依赖型形式的特性鉴定。
J Biol Chem. 1981 Jan 25;256(2):656-63.

引用本文的文献

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Studies on hydrogenase.关于氢化酶的研究。
Proc Jpn Acad Ser B Phys Biol Sci. 2013;89(1):16-33. doi: 10.2183/pjab.89.16.
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Structures of F420H2:NADP+ oxidoreductase with and without its substrates bound.结合和未结合底物的F420H2:NADP+氧化还原酶的结构。
EMBO J. 2001 Dec 3;20(23):6561-9. doi: 10.1093/emboj/20.23.6561.

本文引用的文献

1
Stereochemical studies of 8-hydroxy-5-deazaflavin-dependent NADP+ reductase from Methanococcus vannielii.来自万氏甲烷球菌的8-羟基-5-脱氮黄素依赖的NADP⁺还原酶的立体化学研究。
J Biol Chem. 1980 Oct 10;255(19):9025-7.
2
Role of component C in the methylreductase system of Methanobacterium.成分C在甲烷杆菌甲基还原酶系统中的作用。
J Biol Chem. 1980 Sep 25;255(18):8388-9.
3
Purification and properties of 8-hydroxy-5-deazaflavin-dependent NADP+ reductase from Methanococcus vannielii.来自万氏甲烷球菌的8-羟基-5-脱氮黄素依赖的NADP⁺还原酶的纯化及性质
J Biol Chem. 1980 Jul 10;255(13):6462-5.
4
Reconstitution of a formate-NADP+ oxidoreductase from formate dehydrogenase and a 5-deazaflavin-linked NADP+ reductase isolated from Methanococcus vannielii.由甲酸脱氢酶和从万氏甲烷球菌中分离出的5-脱氮黄素连接的NADP⁺还原酶重构甲酸-NADP⁺氧化还原酶。
J Biol Chem. 1980 Feb 10;255(3):1049-53.
5
Analogues of 8-hydroxy-5-deazaflavin cofactor: relative activity as substrates for 8-hydroxy-5-deazaflavin-dependent NADP+ reductase from Methanococcus vannielii.8-羟基-5-脱氮黄素辅因子类似物:作为嗜盐甲烷球菌8-羟基-5-脱氮黄素依赖的NADP+还原酶底物的相对活性。
Biochemistry. 1982 Mar 2;21(5):934-9. doi: 10.1021/bi00534a019.
6
A selenium-containing hydrogenase from Methanococcus vannielii. Identification of the selenium moiety as a selenocysteine residue.来自万氏甲烷球菌的一种含硒氢化酶。将硒部分鉴定为硒代半胱氨酸残基。
J Biol Chem. 1982 Jul 25;257(14):7926-9.
7
Oxidoreductases involved in cell carbon synthesis of Methanobacterium thermoautotrophicum.参与嗜热自养甲烷杆菌细胞碳合成的氧化还原酶。
J Bacteriol. 1977 Nov;132(2):604-13. doi: 10.1128/jb.132.2.604-613.1977.
8
Proposed structure for coenzyme F420 from Methanobacterium.来自甲烷杆菌的辅酶F420的推测结构。
Biochemistry. 1978 Oct 31;17(22):4583-93. doi: 10.1021/bi00615a002.
9
Factor 420-dependent pyridine nucleotide-linked formate metabolism of Methanobacterium ruminantium.反刍甲烷杆菌中依赖420因子的吡啶核苷酸连接的甲酸代谢。
J Bacteriol. 1975 Jan;121(1):192-6. doi: 10.1128/jb.121.1.192-196.1975.
10
Factor 420-dependent pyridine nucleotide-linked hydrogenase system of Methanobacterium ruminantium.反刍甲烷杆菌的420因子依赖性吡啶核苷酸连接氢化酶系统。
J Bacteriol. 1975 Jan;121(1):184-91. doi: 10.1128/jb.121.1.184-191.1975.