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使用注意力辅助深度神经网络的快速纯位移核磁共振光谱学

Fast Pure Shift NMR Spectroscopy Using Attention-Assisted Deep Neural Network.

作者信息

Zhan Haolin, Liu Jiawei, Fang Qiyuan, Chen Xinyu, Ni Yang, Zhou Lingling

机构信息

Department of Biomedical Engineering, Anhui Provincial Engineering Research Center of Semiconductor Inspection Technology and Instrument, Anhui Province Key Laboratory of Measuring Theory and Precision Instrument, School of Instrument Science and Opto-electronics Engineering, Hefei University of Technology, Hefei, 230009, China.

出版信息

Adv Sci (Weinh). 2024 Aug;11(29):e2309810. doi: 10.1002/advs.202309810. Epub 2024 Jun 5.

DOI:10.1002/advs.202309810
PMID:38840448
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11304274/
Abstract

Pure shift NMR spectroscopy enables the robust probing on molecular structure and dynamics, benefiting from great resolution enhancements. Despite extensive application landscapes in various branches of chemistry, the long experimental times induced by the additional time dimension generally hinder its further developments and practical deployments, especially for multi-dimensional pure shift NMR. Herein, this study proposes and implements the fast, reliable, and robust reconstruction for accelerated pure shift NMR spectroscopy with lightweight attention-assisted deep neural network. This deep learning protocol allows one to regain high-resolution signals and suppress undersampling artifacts, as well as furnish high-fidelity signal intensities along with the accelerated pure shift acquisition, benefitting from the introduction of the attention mechanism to highlight the spectral feature and information of interest. Extensive results of simulated and experimental NMR data demonstrate that this attention-assisted deep learning protocol enables the effective recovery of weak signals that are almost drown in the serious undersampling artifacts, and the distinction and recognition of close chemical shifts even though using merely 5.4% data, highlighting its huge potentials on fast pure shift NMR spectroscopy. As a result, this study affords a promising paradigm for the AI-assisted NMR protocols toward broader applications in chemistry, biology, materials, and life sciences, and among others.

摘要

纯位移核磁共振光谱技术能够在高分辨率增强的优势下,对分子结构和动力学进行可靠的探测。尽管在化学的各个分支领域有着广泛的应用前景,但由额外时间维度导致的较长实验时间通常会阻碍其进一步发展和实际应用,特别是对于多维纯位移核磁共振技术。在此,本研究提出并实现了一种快速、可靠且稳健的重建方法,用于借助轻量级注意力辅助深度神经网络加速纯位移核磁共振光谱技术。这种深度学习方案能够让人恢复高分辨率信号并抑制欠采样伪影,同时在加速纯位移采集的过程中提供高保真信号强度,这得益于引入注意力机制来突出感兴趣的光谱特征和信息。大量模拟和实验核磁共振数据的结果表明,这种注意力辅助深度学习方案能够有效恢复几乎淹没在严重欠采样伪影中的微弱信号,并且即使仅使用5.4%的数据也能区分和识别相近的化学位移,凸显了其在快速纯位移核磁共振光谱技术方面的巨大潜力。因此,本研究为人工智能辅助的核磁共振方案提供了一个有前景的范例,有望在化学、生物学、材料科学和生命科学等更广泛的领域得到应用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0cbd/11304274/2419a9cca16a/ADVS-11-2309810-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0cbd/11304274/da56c300e78e/ADVS-11-2309810-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0cbd/11304274/85ce17be26fb/ADVS-11-2309810-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0cbd/11304274/fdc549aeb30f/ADVS-11-2309810-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0cbd/11304274/9dddc276788a/ADVS-11-2309810-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0cbd/11304274/2419a9cca16a/ADVS-11-2309810-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0cbd/11304274/da56c300e78e/ADVS-11-2309810-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0cbd/11304274/85ce17be26fb/ADVS-11-2309810-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0cbd/11304274/fdc549aeb30f/ADVS-11-2309810-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0cbd/11304274/9dddc276788a/ADVS-11-2309810-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0cbd/11304274/2419a9cca16a/ADVS-11-2309810-g003.jpg

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