从粪便样本中分离出的B181菌株的基因组序列草图。
Draft genome sequence of strain B181, isolated from a fecal sample.
作者信息
Plugge Caroline M, Berkhout Maryse D, Galani Anastasia, Wang Taojun, Belzer Clara
机构信息
Laboratory of Microbiology, Wageningen University and Research, Wageningen, the Netherlands.
出版信息
Microbiol Resour Announc. 2024 Jul 18;13(7):e0032024. doi: 10.1128/mra.00320-24. Epub 2024 Jun 12.
Abstract
A mesophilic methanogen, B181 (DSM 11975) was previously isolated from a human fecal sample, grown on carbon dioxide and hydrogen, and subsequently sequenced. The reconstructed 1.9-Mb genome sequence of B181 contributes to our understanding of hydrogenotrophic, CO-reducing methanogenesis in the human gut.
摘要
嗜温产甲烷菌B181（DSM 11975）先前从一份人类粪便样本中分离得到，以二氧化碳和氢气为培养基生长，随后进行了测序。B181重建后的1.9兆碱基基因组序列有助于我们了解人类肠道中氢营养型、一氧化碳还原型产甲烷作用。
相似文献
1
Draft genome sequence of strain B181, isolated from a fecal sample.
Microbiol Resour Announc. 2024 Jul 18;13(7):e0032024. doi: 10.1128/mra.00320-24. Epub 2024 Jun 12.
2
Pan-genome of the dominant human gut-associated archaeon, Methanobrevibacter smithii, studied in twins.
Proc Natl Acad Sci U S A. 2011 Mar 15;108 Suppl 1(Suppl 1):4599-606. doi: 10.1073/pnas.1000071108. Epub 2011 Feb 11.
3
interactions between , and under hydrogenotrophic conditions.
Gut Microbes. 2023 Dec;15(2):2261784. doi: 10.1080/19490976.2023.2261784. Epub 2023 Sep 27.
4
Draft Genome Sequence of Methanothermobacter thermautotrophicus WHS, a Thermophilic Hydrogenotrophic Methanogen from Washburn Hot Springs in Yellowstone National Park, USA.
Microbiol Resour Announc. 2021 Feb 4;10(5):e01157-20. doi: 10.1128/MRA.01157-20.
5
Culturing clinical Methanobrevibacter smithii using GG medium in a minimal anaerobe atmosphere.
J Microbiol Methods. 2023 Apr;207:106704. doi: 10.1016/j.mimet.2023.106704. Epub 2023 Mar 11.
6
Complete Genome Sequence of Strain KB11, Isolated from a Korean Fecal Sample.
Genome Announc. 2018 Feb 15;6(7):e00038-18. doi: 10.1128/genomeA.00038-18.
7
Mutual Exclusion of Species in the Human Gut Microbiota Facilitates Directed Cultivation of a Methanobrevibacter Intestini Representative.
Microbiol Spectr. 2022 Aug 31;10(4):e0084922. doi: 10.1128/spectrum.00849-22. Epub 2022 Jun 14.
8
Draft Genome Sequence of Isolate WWM1085, Obtained from a Human Stool Sample.
Genome Announc. 2017 Sep 28;5(39):e01055-17. doi: 10.1128/genomeA.01055-17.
9
Phylogenetic analysis of Methanobrevibacter isolated from feces of humans and other animals.
Arch Microbiol. 1998 May;169(5):397-403. doi: 10.1007/s002030050589.
10
Methanobrevibacter smithii, a methanogen consistently colonising the newborn stomach.
Eur J Clin Microbiol Infect Dis. 2017 Dec;36(12):2449-2455. doi: 10.1007/s10096-017-3084-7. Epub 2017 Aug 19.
引用本文的文献
1
Mucin-driven ecological interactions in an in vitro synthetic community of human gut microbes.
Glycobiology. 2024 Dec 10;34(12). doi: 10.1093/glycob/cwae085.
本文引用的文献
1
Methanogenic archaea in the human gastrointestinal tract.
Nat Rev Gastroenterol Hepatol. 2022 Dec;19(12):805-813. doi: 10.1038/s41575-022-00673-z. Epub 2022 Sep 1.
2
Twelve years of SAMtools and BCFtools.
Gigascience. 2021 Feb 16;10(2). doi: 10.1093/gigascience/giab008.
3
Using SPAdes De Novo Assembler.
Curr Protoc Bioinformatics. 2020 Jun;70(1):e102. doi: 10.1002/cpbi.102.
4
Irritable Bowel Syndrome, Particularly the Constipation-Predominant Form, Involves an Increase in , Which Is Associated with Higher Methane Production.
Gut Liver. 2016 Nov 15;10(6):932-938. doi: 10.5009/gnl15588.
5
NCBI prokaryotic genome annotation pipeline.
Nucleic Acids Res. 2016 Aug 19;44(14):6614-24. doi: 10.1093/nar/gkw569. Epub 2016 Jun 24.
6
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes.
Genome Res. 2015 Jul;25(7):1043-55. doi: 10.1101/gr.186072.114. Epub 2015 May 14.
7
Richness of human gut microbiome correlates with metabolic markers.
Nature. 2013 Aug 29;500(7464):541-6. doi: 10.1038/nature12506.
8
QUAST: quality assessment tool for genome assemblies.
Bioinformatics. 2013 Apr 15;29(8):1072-5. doi: 10.1093/bioinformatics/btt086. Epub 2013 Feb 19.
9
Fast gapped-read alignment with Bowtie 2.
Nat Methods. 2012 Mar 4;9(4):357-9. doi: 10.1038/nmeth.1923.
10
BEDTools: a flexible suite of utilities for comparing genomic features.
Bioinformatics. 2010 Mar 15;26(6):841-2. doi: 10.1093/bioinformatics/btq033. Epub 2010 Jan 28.
Zotero 插件