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从孟加拉国池塘地表水分离出的耐碳青霉烯类哈基姆RU_CBWP菌株的基因组序列草图

Draft genome sequence of carbapenems-resistant Hakim RU_CBWP strain isolated from a pond surface water in Bangladesh.

作者信息

Khan Muhib Ullah, Romance M, Polash Md Arif-Uz-Zaman, Zahan Nusrat, Ali Md Sumon, Raihan Jafor, Sarker Subir, Haque Md Hakimul

机构信息

Department of Veterinary and Animal Sciences, University of Rajshahi, Rajshahi, Bangladesh.

Biomedical Sciences & Molecular Biology, College of Public Health, Medical and Veterinary Sciences, James Cook University, Townsville, Queensland, Australia.

出版信息

Microbiol Resour Announc. 2024 Jul 18;13(7):e0044024. doi: 10.1128/mra.00440-24. Epub 2024 Jun 12.

DOI:10.1128/mra.00440-24
PMID:38864657
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11256773/
Abstract

We have revealed the genomic sequence of strain Hakim RU_CBWP isolated from pond surface water. Our assembled genome covers 3.787 Mb with 45.5629× coverage, showcasing an average GC content of 38.60%. This genome contains two CRISPR arrays, 17 prophages, 22 antibiotic resistance genes, and 20 virulence factor genes.

摘要

我们已经揭示了从池塘地表水分离出的哈基姆RU_CBWP菌株的基因组序列。我们组装的基因组覆盖3.787兆碱基对，覆盖度为45.5629倍，平均GC含量为38.60%。该基因组包含两个CRISPR阵列、17个原噬菌体、22个抗生素抗性基因和20个毒力因子基因。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3663/11256773/56ed874eeaa8/mra.00440-24.f001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3663/11256773/56ed874eeaa8/mra.00440-24.f001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3663/11256773/56ed874eeaa8/mra.00440-24.f001.jpg

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本文引用的文献

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Microbiol Resour Announc. 2024 May 9;13(5):e0008924. doi: 10.1128/mra.00089-24. Epub 2024 Mar 27.
2
Epidemiology and antimicrobial resistance trends of species in the United Arab Emirates: a retrospective analysis of 12 years of national AMR surveillance data.阿联酋种的流行病学和抗菌药物耐药趋势：对 12 年国家抗菌药物耐药监测数据的回顾性分析。
Front Public Health. 2024 Jan 4;11:1245131. doi: 10.3389/fpubh.2023.1245131. eCollection 2023.
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Joining Forces against Antibiotic Resistance: The One Health Solution.
联合起来对抗抗生素耐药性：“同一健康”解决方案
Pathogens. 2023 Aug 23;12(9):1074. doi: 10.3390/pathogens12091074.
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CRISPRimmunity: an interactive web server for CRISPR-associated Important Molecular events and Modulators Used in geNome edIting Tool identifYing.CRISPR 免疫：用于基因组编辑工具鉴定的 CRISPR 相关重要分子事件和调节剂的交互式网络服务器。
Nucleic Acids Res. 2023 Jul 5;51(W1):W93-W107. doi: 10.1093/nar/gkad425.
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Clin Infect Dis. 2023 May 1;76(Suppl 2):S166-S178. doi: 10.1093/cid/ciad109.
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