Department of Molecular Biology and Biochemistry, University of California, Irvine, CA 92697- 3900, USA.
Department of Chemistry, University of California, Irvine, CA 92697-2025, USA.
Sci Adv. 2024 Jun 14;10(24):eado6169. doi: 10.1126/sciadv.ado6169. Epub 2024 Jun 12.
Nitrogenase plays a key role in the global nitrogen cycle; yet, the evolutionary history of nitrogenase and, particularly, the sequence of appearance between the homologous, yet distinct NifDK (the catalytic component) and NifEN (the cofactor maturase) of the extant molybdenum nitrogenase, remains elusive. Here, we report the ability of NifEN to reduce N at its surface-exposed L-cluster ([FeSC]), a structural/functional homolog of the M-cluster (or cofactor; [(-homocitrate)MoFeSC]) of NifDK. Furthermore, we demonstrate the ability of the L-cluster-bound NifDK to mimic its NifEN counterpart and enable N reduction. These observations, coupled with phylogenetic, ecological, and mechanistic considerations, lead to the proposal of a NifEN-like, L-cluster-carrying protein as an ancient nitrogenase, the exploration of which could shed crucial light on the evolutionary origin of nitrogenase and related enzymes.
固氮酶在全球氮循环中起着关键作用;然而,固氮酶的进化历史,特别是现存钼氮酶的同源但不同的 NifDK(催化成分)和 NifEN(辅助因子成熟酶)之间的出现顺序,仍然难以捉摸。在这里,我们报告了 NifEN 在其表面暴露的 L 簇([FeSC])上还原 N 的能力,L 簇是 NifDK 的 M 簇(或辅助因子;[(- 同型柠檬酸)MoFeSC])的结构/功能同源物。此外,我们证明了 L 簇结合的 NifDK 能够模拟其 NifEN 对应物并实现 N 的还原。这些观察结果,加上系统发育、生态和机制方面的考虑,导致提出了一种类似 NifEN 的、携带 L 簇的蛋白质作为古老的固氮酶,对其的探索可以为固氮酶和相关酶的进化起源提供关键的启示。