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由催化四联体和两条通道实现的水中生物催化杂芳族酰胺形成

Biocatalytic Heteroaromatic Amide Formation in Water Enabled by a Catalytic Tetrad and Two Access Tunnels.

作者信息

Zukic Erna, Mokos Daniel, Weber Melanie, Stix Niklas, Ditrich Klaus, Ferrario Valerio, Müller Henrik, Willrodt Christian, Gruber Karl, Daniel Bastian, Kroutil Wolfgang

机构信息

Austrian Centre of Industrial Biotechnology Acib GmbH c/o University of Graz, Heinrichstrasse 28, 8010 Graz, Austria.

Institute of Molecular Biosciences, University of Graz, Humboldtstraße 50, 8010 Graz, Austria.

出版信息

ACS Catal. 2024 May 25;14(11):8913-8921. doi: 10.1021/acscatal.4c01268. eCollection 2024 Jun 7.

DOI:10.1021/acscatal.4c01268
PMID:38868102
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11165448/
Abstract

The amide moiety belongs to the most common motives in pharmaceutical chemistry, present in many prescribed small-molecule pharmaceuticals. Methods for its manufacture are still in high demand, especially using water/buffer as a solvent and avoiding stoichiometric amounts of activation reagents. Herein, we identified from a library of lipases/esterases/acyltransferases and variants thereof a lipase originating from sp. HXN-200 (SpL) able to form amides in aqueous solution starting from a broad scope of sterically demanding heteroaromatic ethyl esters as well as aliphatic amines, reaching isolated yields up to 99% on preparative scale and space time yields of up to 864 g L d; thus, in selected cases, the amide was formed within minutes. The enzyme features an aspartate next to the canonical serine of the catalytic triad, which was essential for amide formation. Furthermore, the enzyme structure revealed two tunnels to the active site, presumably one for the ester and one for the amine, which permit the bringing together of the sterically demanding heteroaromatic esters and the amine in the active site. This work shows that biocatalytic amide formation starting from various five- and six-membered heteroaromatic ethyl esters in the buffer can serve as a platform for preparative amide synthesis.

摘要

酰胺部分是药物化学中最常见的基团之一,存在于许多处方药小分子中。其制备方法的需求仍然很高,特别是使用水/缓冲液作为溶剂并避免使用化学计量的活化试剂。在此,我们从脂肪酶/酯酶/酰基转移酶及其变体文库中鉴定出一种源自sp. HXN-200的脂肪酶(SpL),它能够从多种空间位阻较大的杂芳族乙酯和脂肪族胺开始,在水溶液中形成酰胺,在制备规模上分离产率高达99%,时空产率高达864 g L⁻¹ d⁻¹;因此,在某些情况下,酰胺在几分钟内即可形成。该酶在催化三联体的典型丝氨酸旁边有一个天冬氨酸,这对酰胺形成至关重要。此外,酶结构显示有两条通向活性位点的通道,大概一条用于酯,一条用于胺,这使得空间位阻较大的杂芳族酯和胺在活性位点聚集在一起。这项工作表明,在缓冲液中从各种五元及六元杂芳族乙酯开始进行生物催化酰胺形成可作为制备酰胺合成的一个平台。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c517/11165448/0f34e054f849/cs4c01268_0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c517/11165448/d0aebcf8cffe/cs4c01268_0006.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c517/11165448/0f34e054f849/cs4c01268_0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c517/11165448/d0aebcf8cffe/cs4c01268_0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c517/11165448/71e28cda1990/cs4c01268_0007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c517/11165448/34a6b117b0e3/cs4c01268_0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c517/11165448/4bfdce2da1d4/cs4c01268_0002.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c517/11165448/4ff04cdffb7b/cs4c01268_0004.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c517/11165448/0f34e054f849/cs4c01268_0005.jpg

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