Department of Molecular Genetics, University of Toronto, Toronto, ON M5G 1M1, Canada.
G3 (Bethesda). 2024 Aug 7;14(8). doi: 10.1093/g3journal/jkae124.
Candida albicans is a major fungal pathogen of humans that can cause serious systemic infections in vulnerable immunocompromised populations. One of its virulence attributes is its capacity to transition between yeast and filamentous morphologies, but our understanding of this process remains incomplete. Here, we analyzed data from a functional genomic screen performed with the C. albicans Gene Replacement And Conditional Expression collection to identify genes crucial for morphogenesis in host-relevant conditions. Through manual scoring of microscopy images coupled with analysis of each image using a deep learning-based method termed Candescence, we identified 307 genes important for filamentation in tissue culture medium at 37°C with 5% CO2. One such factor was orf19.5963, which is predicted to encode the prenyltransferase Nus1 based on sequence homology to Saccharomyces cerevisiae. We further showed that Nus1 and its predicted interacting partner Rer2 are important for filamentation in multiple liquid filament-inducing conditions as well as for wrinkly colony formation on solid agar. Finally, we highlight that Nus1 and Rer2 likely govern C. albicans morphogenesis due to their importance in intracellular trafficking, as well as maintaining lipid homeostasis. Overall, this work identifies Nus1 and Rer2 as important regulators of C. albicans filamentation and highlights the power of functional genomic screens in advancing our understanding of gene function in human fungal pathogens.
白色念珠菌是一种主要的人类真菌病原体,可导致易受感染的免疫功能低下人群发生严重的系统性感染。其毒力特征之一是其在酵母和丝状形态之间转变的能力,但我们对这一过程的理解仍不完整。在这里,我们分析了使用白色念珠菌基因替换和条件表达文库进行的功能基因组筛选的数据,以鉴定在宿主相关条件下对形态发生至关重要的基因。通过对显微镜图像的手动评分,结合使用一种称为 Candescence 的基于深度学习的方法对每张图像进行分析,我们鉴定出了 307 个在 37°C 和 5% CO2 的组织培养基中丝状形成重要的基因。其中一个因素是 orf19.5963,根据与酿酒酵母的序列同源性,预测其编码法尼基转移酶 Nus1。我们进一步表明,Nus1 和其预测的相互作用伙伴 Rer2 在多种液体丝状诱导条件下的丝状形成以及在固体琼脂上的褶皱菌落形成中都很重要。最后,我们强调,Nus1 和 Rer2 可能由于其在细胞内运输以及维持脂质动态平衡中的重要性而调节白色念珠菌的形态发生。总的来说,这项工作鉴定了 Nus1 和 Rer2 是白色念珠菌丝状形成的重要调节剂,并强调了功能基因组筛选在推进我们对人类真菌病原体中基因功能的理解方面的强大功能。