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利用高通量方法监测和量化复制叉动力学。

Monitoring and quantifying replication fork dynamics with high-throughput methods.

机构信息

UMR9019 - CNRS, Intégrité du Génome et Cancers, Université Paris-Saclay, Gustave Roussy, Villejuif, France, 114 rue Edouard Vaillant, 94805, Villejuif, France.

出版信息

Commun Biol. 2024 Jun 14;7(1):729. doi: 10.1038/s42003-024-06412-1.

DOI:10.1038/s42003-024-06412-1
PMID:38877080
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11178896/
Abstract

Before each cell division, eukaryotic cells must replicate their chromosomes to ensure the accurate transmission of genetic information. Chromosome replication involves more than just DNA duplication; it also includes chromatin assembly, inheritance of epigenetic marks, and faithful resumption of all genomic functions after replication. Recent progress in quantitative technologies has revolutionized our understanding of the complexity and dynamics of DNA replication forks at both molecular and genomic scales. Here, we highlight the pivotal role of these novel methods in uncovering the principles and mechanisms of chromosome replication. These technologies have illuminated the regulation of genome replication programs, quantified the impact of DNA replication on genomic mutations and evolutionary processes, and elucidated the mechanisms of replication-coupled chromatin assembly and epigenome maintenance.

摘要

在每个细胞分裂之前,真核细胞必须复制它们的染色体,以确保遗传信息的准确传递。染色体复制不仅仅涉及 DNA 复制;它还包括染色质组装、表观遗传标记的遗传,以及在复制后所有基因组功能的忠实恢复。定量技术的最新进展彻底改变了我们对分子和基因组尺度上 DNA 复制叉的复杂性和动态性的理解。在这里,我们强调了这些新方法在揭示染色体复制原理和机制方面的关键作用。这些技术阐明了基因组复制程序的调控,量化了 DNA 复制对基因组突变和进化过程的影响,并揭示了复制偶联的染色质组装和表观基因组维持的机制。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1586/11178896/f4b992c4b1c4/42003_2024_6412_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1586/11178896/e57b4b8165a8/42003_2024_6412_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1586/11178896/431a7a8dc5c1/42003_2024_6412_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1586/11178896/8760d267e079/42003_2024_6412_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1586/11178896/f4b992c4b1c4/42003_2024_6412_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1586/11178896/e57b4b8165a8/42003_2024_6412_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1586/11178896/431a7a8dc5c1/42003_2024_6412_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1586/11178896/8760d267e079/42003_2024_6412_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1586/11178896/f4b992c4b1c4/42003_2024_6412_Fig4_HTML.jpg

相似文献

1
Monitoring and quantifying replication fork dynamics with high-throughput methods.利用高通量方法监测和量化复制叉动力学。
Commun Biol. 2024 Jun 14;7(1):729. doi: 10.1038/s42003-024-06412-1.
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Chromatin Replication and Histone Dynamics.染色质复制与组蛋白动力学。
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Replication-Coupled Chromatin Remodeling: An Overview of Disassembly and Assembly of Chromatin during Replication.复制偶联染色质重塑:复制过程中染色质解聚与组装概述。
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Chromatin replication and epigenetic cell memory.染色质复制和表观遗传细胞记忆。
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Nascent chromatin occupancy profiling reveals locus- and factor-specific chromatin maturation dynamics behind the DNA replication fork.新生染色质占有率分析揭示了 DNA 复制叉后染色质成熟动力学的基因座和因子特异性。
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本文引用的文献

1
Improved detection of DNA replication fork-associated proteins.提高 DNA 复制叉相关蛋白的检测水平。
Cell Rep. 2024 May 28;43(5):114178. doi: 10.1016/j.celrep.2024.114178. Epub 2024 May 2.
2
A Decade of Discovery-Eukaryotic Replisome Disassembly at Replication Termination.发现的十年——复制终止时的真核生物复制体解体
Biology (Basel). 2024 Mar 31;13(4):233. doi: 10.3390/biology13040233.
3
Parental histone transfer caught at the replication fork.组蛋白从亲代到子代的转移发生在复制叉处。
Nature. 2024 Mar;627(8005):890-897. doi: 10.1038/s41586-024-07152-2. Epub 2024 Mar 6.
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Collisions of RNA polymerases behind the replication fork promote alternative RNA splicing in newly replicated chromatin.复制叉后 RNA 聚合酶的碰撞促进了新复制染色质中选择性 RNA 剪接。
Mol Cell. 2024 Jan 18;84(2):221-233.e6. doi: 10.1016/j.molcel.2023.11.036. Epub 2023 Dec 26.
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Asymmetric distribution of parental H3K9me3 in S phase silences L1 elements.父代 H3K9me3 在 S 期的不对称分布使 L1 元件沉默。
Nature. 2023 Nov;623(7987):643-651. doi: 10.1038/s41586-023-06711-3. Epub 2023 Nov 8.
6
Symmetric inheritance of parental histones contributes to safeguarding the fate of mouse embryonic stem cells during differentiation.亲本组蛋白的对称遗传有助于在分化过程中保护小鼠胚胎干细胞的命运。
Nat Genet. 2023 Sep;55(9):1555-1566. doi: 10.1038/s41588-023-01477-w. Epub 2023 Sep 4.
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Symmetric inheritance of parental histones governs epigenome maintenance and embryonic stem cell identity.双亲组蛋白的对称遗传控制着表观基因组的维持和胚胎干细胞的身份。
Nat Genet. 2023 Sep;55(9):1567-1578. doi: 10.1038/s41588-023-01476-x. Epub 2023 Sep 4.
8
Where and when to start: Regulating DNA replication origin activity in eukaryotic genomes.在何处以及何时开始:调控真核基因组中 DNA 复制起始点的活性。
Nucleus. 2023 Dec;14(1):2229642. doi: 10.1080/19491034.2023.2229642.
9
Impaired histone inheritance promotes tumor progression.染色质遗传缺陷促进肿瘤进展。
Nat Commun. 2023 Jun 10;14(1):3429. doi: 10.1038/s41467-023-39185-y.
10
Neural network and kinetic modelling of human genome replication reveal replication origin locations and strengths.神经网络和人类基因组复制的动力学模型揭示了复制原点的位置和强度。
PLoS Comput Biol. 2023 May 30;19(5):e1011138. doi: 10.1371/journal.pcbi.1011138. eCollection 2023 May.