Cancer Medical Center, The Second Affiliated Hospital of Nanjing Medical University, Nanjing, Jiangsu, 210011, P.R. China.
Department of Respiratory Endoscopy, Shanghai Chest Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai, 200030, P.R. China.
J Biomed Sci. 2024 Jun 14;31(1):63. doi: 10.1186/s12929-024-01047-0.
Within the intricate tapestry of molecular research, noncoding RNAs (ncRNAs) were historically overshadowed by a pervasive presumption of their inability to encode proteins or peptides. However, groundbreaking revelations have challenged this notion, unveiling select ncRNAs that surprisingly encode peptides specifically those nearing a succinct 100 amino acids. At the forefront of this epiphany stand lncRNAs and circRNAs, distinctively characterized by their embedded small open reading frames (sORFs). Increasing evidence has revealed different functions and mechanisms of peptides/proteins encoded by ncRNAs in cancer, including promotion or inhibition of cancer cell proliferation, cellular metabolism (glucose metabolism and lipid metabolism), and promotion or concerted metastasis of cancer cells. The discoveries not only accentuate the depth of ncRNA functionality but also open novel avenues for oncological research and therapeutic innovations. The main difficulties in the study of these ncRNA-derived peptides hinge crucially on precise peptide detection and sORFs identification. Here, we illuminate cutting-edge methodologies, essential instrumentation, and dedicated databases tailored for unearthing sORFs and peptides. In addition, we also conclude the potential of clinical applications in cancer therapy.
在分子研究的错综复杂的织锦中,非编码 RNA(ncRNA)在历史上因其无法编码蛋白质或肽而被普遍认为没有功能。然而,具有开创性的发现挑战了这一观点,揭示了一些令人惊讶的能够编码肽的特定 ncRNA,这些肽的长度接近简洁的 100 个氨基酸。在这一顿悟的前沿是长非编码 RNA 和 circRNA,它们的特征是嵌入了小开放阅读框(sORF)。越来越多的证据揭示了 ncRNA 编码的肽/蛋白在癌症中的不同功能和机制,包括促进或抑制癌细胞增殖、细胞代谢(葡萄糖代谢和脂质代谢)以及促进或协同癌细胞转移。这些发现不仅强调了 ncRNA 功能的深度,也为肿瘤学研究和治疗创新开辟了新途径。这些 ncRNA 衍生肽研究的主要困难关键在于精确检测肽和识别 sORF。在这里,我们阐述了用于挖掘 sORF 和肽的前沿方法、必要的仪器设备以及专门的数据库。此外,我们还总结了这些 ncRNA 衍生肽在癌症治疗中的潜在临床应用。