nCas9 工程改良靶标相互作用为碱基编辑的增强提供了有效策略。

nCas9 Engineering for Improved Target Interaction Presents an Effective Strategy to Enhance Base Editing.

机构信息

Zhejiang Lab, Hangzhou, Zhejiang, 311121, China.

International Joint Agriculture Research Center for Animal Bio-Breeding, Ministry of Agriculture and Rural Affairs/Key Laboratory of Animal Genetics Breeding and Reproduction of Shaanxi Province, College of Animal Science and Technology, Northwest A&F University, Yangling, Shaanxi, 712100, China.

出版信息

Adv Sci (Weinh). 2024 Aug;11(31):e2405426. doi: 10.1002/advs.202405426. Epub 2024 Jun 17.

Abstract

Base editors (BEs) are a recent generation of genome editing tools that couple a cytidine or adenosine deaminase activity to a catalytically impaired Cas9 moiety (nCas9) to enable specific base conversions at the targeted genomic loci. Given their strong application potential, BEs are under active developments toward greater levels of efficiency and safety. Here, a previously overlooked nCas9-centric strategy is explored for enhancement of BE. Based on a cytosine BE (CBE), 20 point mutations associated with nCas9-target interaction are tested. Subsequently, from the initial positive X-to-arginine hits, combinatorial modifications are applied to establish further enhanced CBE variants (1.1-1.3). Parallel nCas9 modifications in other versions of CBEs including A3A-Y130F-BE4max, YEE-BE4max, CGBE, and split-AncBE4max, as well as in the context of two adenine BEs (ABE), likewise enhance their respective activities. The same strategy also substantially improves the efficiencies of high-fidelity nCas9/BEs. Further evidence confirms that the stabilization of nCas9-substrate interactions underlies the enhanced BE activities. In support of their translational potential, the engineered CBE and ABE variants respectively enable 82% and 25% higher rates of editing than the controls in primary human T-cells. This study thus demonstrates a highly adaptable strategy for enhancing BE, and for optimizing other forms of Cas9-derived tools.

摘要

碱基编辑器(BEs)是新一代的基因组编辑工具,它将胞嘧啶或腺嘌呤脱氨酶活性与催化失活的 Cas9 部分(nCas9)结合在一起,使靶向基因组位置的特定碱基发生转换。鉴于其强大的应用潜力,BE 正在积极开发,以提高效率和安全性。在这里,探索了一种以前被忽视的以 nCas9 为中心的策略来增强 BE。基于胞嘧啶 BE(CBE),测试了与 nCas9 靶相互作用相关的 20 个点突变。随后,从最初的阳性 X 到精氨酸命中,进行组合修饰以建立进一步增强的 CBE 变体(1.1-1.3)。在 CBE 的其他版本(包括 A3A-Y130F-BE4max、YEE-BE4max、CGBE 和分裂 AncBE4max)以及两个腺嘌呤 BE(ABE)中进行相同的 nCas9 修饰,同样增强了它们各自的活性。同样的策略也大大提高了高保真 nCas9/BE 的效率。进一步的证据证实,nCas9-底物相互作用的稳定是增强 BE 活性的基础。为了支持其转化潜力,工程化的 CBE 和 ABE 变体分别在原代人 T 细胞中使编辑率比对照提高了 82%和 25%。因此,这项研究展示了一种高度适应性的增强 BE 的策略,并优化了其他形式的 Cas9 衍生工具。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b5be/11336945/4bc43e93f429/ADVS-11-2405426-g008.jpg

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