Department of Biochemistry, Stanford University, Stanford, United States.
Department of Biological Sciences, Indian Institute of Science Education and Research (IISER) Mohali, Mohali, India.
Elife. 2024 Jun 18;12:RP89794. doi: 10.7554/eLife.89794.
While inhomogeneous diffusivity has been identified as a ubiquitous feature of the cellular interior, its implications for particle mobility and concentration at different length scales remain largely unexplored. In this work, we use agent-based simulations of diffusion to investigate how heterogeneous diffusivity affects the movement and concentration of diffusing particles. We propose that a nonequilibrium mode of membrane-less compartmentalization arising from the convergence of diffusive trajectories into low-diffusive sinks, which we call 'diffusive lensing,' is relevant for living systems. Our work highlights the phenomenon of diffusive lensing as a potentially key driver of mesoscale dynamics in the cytoplasm, with possible far-reaching implications for biochemical processes.
虽然非均相扩散已被确定为细胞内部的普遍特征,但它对不同长度尺度下粒子迁移率和浓度的影响在很大程度上仍未得到探索。在这项工作中,我们使用基于代理的扩散模拟来研究非均相扩散如何影响扩散粒子的运动和浓度。我们提出,由于扩散轨迹汇聚到低扩散汇中而产生的无膜隔室化的非平衡模式,我们称之为“扩散透镜”,与生命系统有关。我们的工作强调了扩散透镜现象作为细胞质中中尺度动力学的潜在关键驱动力,这可能对生化过程产生深远影响。