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用于识别肌肉减少症和骨关节炎潜在共同发病机制的生物信息学和系统生物学方法。

Bioinformatics and systems biology approaches to identify potential common pathogeneses for sarcopenia and osteoarthritis.

作者信息

Yang Jinghong, Zhong Jun, Du Yimin, Wang Zi, Jiang Lujun, Li Zhong, Liu Yanshi

机构信息

Department of Orthopedics, The Affiliated Hospital, Southwest Medical University, Lu Zhou, China.

Sichuan Provincial Laboratory of Orthopaedic Engineering, Southwest Medical University, Lu Zhou, China.

出版信息

Front Med (Lausanne). 2024 Jun 18;11:1380210. doi: 10.3389/fmed.2024.1380210. eCollection 2024.

Abstract

Sarcopenia, a geriatric syndrome characterized by progressive loss of muscle mass and strength, and osteoarthritis, a common degenerative joint disease, are both prevalent in elderly individuals. However, the relationship and molecular mechanisms underlying these two diseases have not been fully elucidated. In this study, we screened microarray data from the Gene Expression Omnibus to identify associations between sarcopenia and osteoarthritis. We employed multiple statistical methods and bioinformatics tools to analyze the shared DEGs (differentially expressed genes). Additionally, we identified 8 hub genes through functional enrichment analysis, protein-protein interaction analysis, transcription factor-gene interaction network analysis, and TF-miRNA coregulatory network analysis. We also discovered potential shared pathways between the two diseases, such as transcriptional misregulation in cancer, the FOXO signalling pathway, and endometrial cancer. Furthermore, based on common DEGs, we found that strophanthidin may be an optimal drug for treating sarcopenia and osteoarthritis, as indicated by the Drug Signatures database. Immune infiltration analysis was also performed on the sarcopenia and osteoarthritis datasets. Finally, receiver operating characteristic (ROC) curves were plotted to verify the reliability of our results. Our findings provide a theoretical foundation for future research on the potential common pathogenesis and molecular mechanisms of sarcopenia and osteoarthritis.

摘要

肌肉减少症是一种以肌肉质量和力量逐渐丧失为特征的老年综合征,骨关节炎是一种常见的退行性关节疾病,二者在老年人中都很普遍。然而,这两种疾病之间的关系及其分子机制尚未完全阐明。在本研究中,我们筛选了基因表达综合数据库中的微阵列数据,以确定肌肉减少症和骨关节炎之间的关联。我们采用多种统计方法和生物信息学工具来分析共同的差异表达基因(DEGs)。此外,我们通过功能富集分析、蛋白质-蛋白质相互作用分析、转录因子-基因相互作用网络分析和TF-miRNA共调控网络分析,确定了8个枢纽基因。我们还发现了这两种疾病之间潜在的共同通路,如癌症中的转录失调、FOXO信号通路和子宫内膜癌。此外,根据共同的DEGs,药物特征数据库表明,毒毛花苷可能是治疗肌肉减少症和骨关节炎的最佳药物。我们还对肌肉减少症和骨关节炎数据集进行了免疫浸润分析。最后,绘制了受试者工作特征(ROC)曲线以验证我们结果的可靠性。我们的研究结果为未来研究肌肉减少症和骨关节炎潜在的共同发病机制和分子机制提供了理论基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a59b/11221828/df9da484f155/fmed-11-1380210-g001.jpg

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