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基于深度学习的金属有机框架(MOF)推荐系统

Deep learning-based recommendation system for metal-organic frameworks (MOFs).

作者信息

Zhang Xiaoqi, Jablonka Kevin Maik, Smit Berend

机构信息

Laboratory of Molecular Simulation (LSMO), Institut des Sciences et Ingénierie Chimiques, Ecole Polytechnique Fédérale de Lausanne(EPFL) Rue de l'Industrie 17 CH-1951 Sion Valais Switzerland

Laboratory of Organic and Macromolecular Chemistry (IOMC), Friedrich Schiller University Jena Humboldtstrasse 10 07743 Jena Germany.

出版信息

Digit Discov. 2024 Jun 10;3(7):1410-1420. doi: 10.1039/d4dd00116h. eCollection 2024 Jul 10.

DOI:10.1039/d4dd00116h
PMID:38993728
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11235176/
Abstract

This work presents a recommendation system for metal-organic frameworks (MOFs) inspired by online content platforms. By leveraging the unsupervised Doc2Vec model trained on document-structured intrinsic MOF characteristics, the model embeds MOFs into a high-dimensional chemical space and suggests a pool of promising materials for specific applications based on user-endorsed MOFs with similarity analysis. This proposed approach significantly reduces the need for exhaustive labeling of every material in the database, focusing instead on a select fraction for in-depth investigation. Ranging from methane storage and carbon capture to quantum properties, this study illustrates the system's adaptability to various applications.

摘要

这项工作提出了一种受在线内容平台启发的金属有机框架(MOF)推荐系统。通过利用基于文档结构的MOF固有特性训练的无监督Doc2Vec模型,该模型将MOF嵌入到高维化学空间中,并通过相似性分析,根据用户认可的MOF为特定应用推荐一批有前景的材料。该方法显著减少了对数据库中每种材料进行详尽标记的需求,而是专注于一小部分进行深入研究。从甲烷储存、碳捕获到量子特性,本研究展示了该系统对各种应用的适应性。

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本文引用的文献

1
DigiMOF: A Database of Metal-Organic Framework Synthesis Information Generated via Text Mining.DigiMOF:通过文本挖掘生成的金属有机框架合成信息数据库。
Chem Mater. 2023 May 18;35(11):4510-4524. doi: 10.1021/acs.chemmater.3c00788. eCollection 2023 Jun 13.
2
An Ecosystem for Digital Reticular Chemistry.数字网状化学的生态系统。
ACS Cent Sci. 2023 Mar 10;9(4):563-581. doi: 10.1021/acscentsci.2c01177. eCollection 2023 Apr 26.
3
Mining Knowledge from Crystal Structures: Oxidation States of Oxygen-Coordinated Metal Atoms in Ionic and Coordination Compounds.
从晶体结构中挖掘知识:离子化合物和配位化合物中氧配位金属原子的氧化态
J Chem Inf Model. 2022 May 23;62(10):2332-2340. doi: 10.1021/acs.jcim.2c00080. Epub 2022 May 6.
4
Local structure order parameters and site fingerprints for quantification of coordination environment and crystal structure similarity.用于量化配位环境和晶体结构相似性的局部结构序参数和位点指纹图谱。
RSC Adv. 2020 Feb 7;10(10):6063-6081. doi: 10.1039/c9ra07755c. eCollection 2020 Feb 4.
5
Metal-Organic Framework Based Gas Sensors.基于金属有机框架的气体传感器。
Adv Sci (Weinh). 2022 Feb;9(6):e2104374. doi: 10.1002/advs.202104374. Epub 2021 Dec 22.
6
Diversifying Databases of Metal Organic Frameworks for High-Throughput Computational Screening.用于高通量计算筛选的金属有机框架数据库多样化
ACS Appl Mater Interfaces. 2021 Dec 29;13(51):61004-61014. doi: 10.1021/acsami.1c16220. Epub 2021 Dec 15.
7
The Current Status of MOF and COF Applications.金属有机框架材料(MOF)和共价有机框架材料(COF)的应用现状
Angew Chem Int Ed Engl. 2021 Nov 2;60(45):23975-24001. doi: 10.1002/anie.202106259. Epub 2021 Jul 26.
8
Machine Learning Meets with Metal Organic Frameworks for Gas Storage and Separation.机器学习与金属有机框架用于气体存储和分离。
J Chem Inf Model. 2021 May 24;61(5):2131-2146. doi: 10.1021/acs.jcim.1c00191. Epub 2021 Apr 29.
9
XGBoost: An Optimal Machine Learning Model with Just Structural Features to Discover MOF Adsorbents of Xe/Kr.XGBoost:一种仅基于结构特征的最优机器学习模型,用于发现氙/氪的金属有机框架吸附剂。
ACS Omega. 2021 Mar 19;6(13):9066-9076. doi: 10.1021/acsomega.1c00100. eCollection 2021 Apr 6.
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Too Many Materials and Too Many Applications: An Experimental Problem Waiting for a Computational Solution.材料过多与应用过多:一个等待计算解决方案的实验问题。
ACS Cent Sci. 2020 Nov 25;6(11):1890-1900. doi: 10.1021/acscentsci.0c00988. Epub 2020 Oct 2.